Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0347.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       49   3e-08
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   5.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   6.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   6.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   6.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 49.2 bits (112), Expect = 3e-08
 Identities = 24/62 (38%), Positives = 33/62 (53%)
 Frame = +1

Query: 346 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQT 525
           +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    P     ++ +   QT
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQT 242

Query: 526 GS 531
           GS
Sbjct: 243 GS 244


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 434 RQWVTKNRRPFKLKAGP 484
           R+WV+   RPF+++  P
Sbjct: 454 RRWVSTMSRPFEVRYDP 470


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 491 MSGKNLLAXPKRVPGKNVGLHL 556
           M  +N LA P+R  G  V LH+
Sbjct: 298 MRFRNGLAFPQRETGATVPLHM 319



 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 244 PIWASHVLPSREFFFP 197
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 78  TGIIAVETVVPNLEEATNSA 137
           T + A   V P +EE TN+A
Sbjct: 412 TALGAAALVAPGMEEPTNTA 431


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 491 MSGKNLLAXPKRVPGKNVGLHL 556
           M  +N LA P+R  G  V LH+
Sbjct: 298 MRFRNGLAFPQRETGATVPLHM 319



 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 244 PIWASHVLPSREFFFP 197
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 304 KRSPYEVEEYRNKHEVTV 357
           K  P++V+++R+K  VT+
Sbjct: 64  KNYPFDVDQWRDKTFVTI 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,570
Number of Sequences: 438
Number of extensions: 3427
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)