Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0347.Seq
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 101 3e-22
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 95 2e-20
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 95 2e-20
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 72 3e-13
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 69 2e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 69 2e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 69 2e-12
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 64 7e-11
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 64 9e-11
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 63 1e-10
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 55 4e-08
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 52 4e-07
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 45 4e-05
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 44 1e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 40 0.002
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 39 0.002
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 37 0.009
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 36 0.016
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 36 0.021
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 36 0.021
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 36 0.027
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 36 0.027
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 35 0.036
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 35 0.047
At3g44550.1 68416.m04788 acyl CoA reductase, putative similar to... 35 0.047
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 34 0.063
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 33 0.11
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 32 0.25
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 31 0.44
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote... 30 1.0
At2g25460.1 68415.m03049 expressed protein 30 1.0
At3g44560.1 68416.m04789 acyl CoA reductase, putative similar to... 30 1.3
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 29 1.8
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 4.1
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 4.1
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 7.2
At5g22420.1 68418.m02615 acyl CoA reductase, putative similar to... 27 7.2
At1g15100.1 68414.m01803 zinc finger (C3HC4-type RING finger) fa... 27 7.2
At4g33790.1 68417.m04796 acyl CoA reductase, putative similar to... 27 9.5
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 27 9.5
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 27 9.5
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 101 bits (243), Expect = 3e-22
Identities = 44/92 (47%), Positives = 59/92 (64%)
Frame = +1
Query: 256 LQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 435
L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV + VK
Sbjct: 56 LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVK 115
Query: 436 TMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
G+ EPTPIQ+QGWP + ++ IG+ +TGS
Sbjct: 116 KAGFTEPTPIQSQGWPMAMKGRDLIGIAETGS 147
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 461 PFKLKAGPIAMSGKNLLAXPKRVPGKNVGLHLASXCHIN 577
P + + P+AM G++L+ + GK + L + H+N
Sbjct: 124 PIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVN 162
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 95.5 bits (227), Expect = 2e-20
Identities = 41/99 (41%), Positives = 63/99 (63%)
Frame = +1
Query: 235 PRLGFCLLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 414
P+ F L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 415 YVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
+ + + +G+ EPTPIQAQGWP + ++ IG+ +TGS
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGS 213
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 95.5 bits (227), Expect = 2e-20
Identities = 41/99 (41%), Positives = 63/99 (63%)
Frame = +1
Query: 235 PRLGFCLLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 414
P+ F L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 415 YVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
+ + + +G+ EPTPIQAQGWP + ++ IG+ +TGS
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGS 213
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 72.1 bits (169), Expect = 3e-13
Identities = 30/91 (32%), Positives = 51/91 (56%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
+P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 439 MGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
Y++PT IQ Q P ++ IG+ +TGS
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVIGIAKTGS 276
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 68.9 bits (161), Expect = 2e-12
Identities = 31/82 (37%), Positives = 46/82 (56%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 465
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 466 QAQGWPDSYVWKEFIGVXQTGS 531
QAQ WP + ++ + + +TGS
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGS 206
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 68.9 bits (161), Expect = 2e-12
Identities = 31/82 (37%), Positives = 46/82 (56%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 465
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 466 QAQGWPDSYVWKEFIGVXQTGS 531
QAQ WP + ++ + + +TGS
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGS 206
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 68.9 bits (161), Expect = 2e-12
Identities = 31/82 (37%), Positives = 46/82 (56%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 465
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 466 QAQGWPDSYVWKEFIGVXQTGS 531
QAQ WP + ++ + + +TGS
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGS 206
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 64.1 bits (149), Expect = 7e-11
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Frame = +1
Query: 268 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 435
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 436 TMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
+ G+ PTPIQAQ WP + ++ + + +TGS
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGS 483
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 63.7 bits (148), Expect = 9e-11
Identities = 31/91 (34%), Positives = 49/91 (53%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
+PF KNFY + + + V YR + E+ V G +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 439 MGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
+ Y++P PIQAQ P ++ IGV +TGS
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCIGVAKTGS 444
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 461 PFKLKAGPIAMSGKNLLAXPKRVPGKNVGLHLASXCHINN 580
P + +A PI MSG++ + K GK +G L HI +
Sbjct: 421 PIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKD 460
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 63.3 bits (147), Expect = 1e-10
Identities = 30/91 (32%), Positives = 49/91 (53%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
+PF KNFY + + + EV YR + E+ V G +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 439 MGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
+ Y++P PIQ Q P ++ IGV +TGS
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCIGVAKTGS 577
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 461 PFKLKAGPIAMSGKNLLAXPKRVPGKNVGLHLASXCHINN 580
P + +A PI MSG++ + K GK +G L HI +
Sbjct: 554 PIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKD 593
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 54.8 bits (126), Expect = 4e-08
Identities = 30/96 (31%), Positives = 50/96 (52%)
Frame = +1
Query: 244 GFCLLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 423
G +P + ++ P V K S +++ R + +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 424 QGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
+ +K G PTPIQ QG P ++ IG+ TGS
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGS 145
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 51.6 bits (118), Expect = 4e-07
Identities = 27/84 (32%), Positives = 44/84 (52%)
Frame = +1
Query: 280 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 459
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 460 PIQAQGWPDSYVWKEFIGVXQTGS 531
PIQ QG P ++ IG+ TGS
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGS 194
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 44.8 bits (101), Expect = 4e-05
Identities = 19/67 (28%), Positives = 36/67 (53%)
Frame = +1
Query: 331 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFI 510
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P ++ I
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 511 GVXQTGS 531
G+ +TGS
Sbjct: 355 GIAETGS 361
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +1
Query: 319 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSY 492
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 493 VWKEFIGVXQTGS 531
++ IG+ +TGS
Sbjct: 150 DGRDLIGIAKTGS 162
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +1
Query: 334 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPDSYVWK 501
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q P +
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 502 EFIGVXQTGS 531
E TGS
Sbjct: 180 ECFACAPTGS 189
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +1
Query: 310 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 483
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 484 DSYVWKEFIGVXQTGS 531
+ K + TGS
Sbjct: 143 AALTGKSLLASADTGS 158
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 37.1 bits (82), Expect = 0.009
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +1
Query: 352 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
TV GV H F E N + + +T+GYK+PTPIQA P + ++ TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 36.3 bits (80), Expect = 0.016
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +1
Query: 367 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
E + ++ F E + + + + +G+K P+ IQA+ P + K+ IG+ QTGS
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGS 57
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 35.9 bits (79), Expect = 0.021
Identities = 22/91 (24%), Positives = 40/91 (43%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 439 MGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
MG+ T IQA+ P + ++ +G +TGS
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGS 202
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 35.9 bits (79), Expect = 0.021
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Frame = +1
Query: 256 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 432
+ PF + +P P ++ + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 433 KTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
+ Y +PTP+Q P ++ + QTGS
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMACAQTGS 207
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 35.5 bits (78), Expect = 0.027
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +1
Query: 349 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTG 528
V SG +V P+ F + + D + ++ Y PTP+Q P ++ + QTG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 529 S 531
S
Sbjct: 199 S 199
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 35.5 bits (78), Expect = 0.027
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +1
Query: 349 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTG 528
V SG +V P+ F + + D + ++ Y PTP+Q P ++ + QTG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 529 S 531
S
Sbjct: 199 S 199
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 35.1 bits (77), Expect = 0.036
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 430 VKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
V + G+ P+PIQAQ WP + ++ + + +TGS
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGS 277
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 414
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 34.7 bits (76), Expect = 0.047
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Frame = +1
Query: 262 PF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 439 MGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
Y +PTP+Q P ++ + QTGS
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMACAQTGS 194
>At3g44550.1 68416.m04788 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 402
Score = 34.7 bits (76), Expect = 0.047
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Frame = +1
Query: 292 PTVLKRSPYEVEEYRNKHEVTVS-GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 468
P ++ P+ +EE RN++ + + +E Q +E N D ++ + T+ KE +
Sbjct: 170 PGLIPEKPFIMEEIRNENGLQLDINLERELMKQRLKELNEQDCSEEDI-TLSMKELGMER 228
Query: 469 AQ--GWPDSYVWKEFIGVXQTGSRQKRWP 549
A+ GWP++YV+ + +G G ++ P
Sbjct: 229 AKLHGWPNTYVFTKSMGEMLLGKHKENLP 257
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 34.3 bits (75), Expect = 0.063
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
FE ++ + K +G ++PTP+Q P ++ +G+ QTGS
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGS 106
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
FE N V +K GYK PTPIQ + P + + + +TGS
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGS 76
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 379 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
PI+ F++ D V +GV GYK+P+ IQ + ++ I Q+G+
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGT 70
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 31.5 bits (68), Expect = 0.44
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = +1
Query: 319 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVW 498
EVEE RN E E P + FEE + + + G ++PT IQ P
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 499 KEFIGVXQTGS 531
K+ + +TGS
Sbjct: 84 KDVVARAKTGS 94
>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
kinase, putative
Length = 654
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -2
Query: 486 IGPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISILFDFIW*S 307
+GP +L + F++ CL + L + C + + + + A ++ + L W S
Sbjct: 10 VGPVFTLRPSKGFLSTCLVSFLFVTTTFCSYAIADLNSDRQALLAFAASVPHLRRLNWNS 69
Query: 306 FEN-CRMWI 283
+ C+ W+
Sbjct: 70 TNHICKSWV 78
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.0
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -3
Query: 200 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 84
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At3g44560.1 68416.m04789 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 449
Score = 29.9 bits (64), Expect = 1.3
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Frame = +1
Query: 292 PTVLKRSPYEVEEYRNKHEVTVS-GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 468
P +L P+ +EE N++ + + +E Q +E N ++G T KE +
Sbjct: 170 PGLLPEKPFVMEEICNENGLQLDINLERELMKQRLKELNEQGCSEEGT-TFYMKELGMER 228
Query: 469 AQ--GWPDSYVWKEFIGVXQTGSRQKRWP 549
A+ GWP++YV+ + +G G+ ++ P
Sbjct: 229 AKLHGWPNTYVFTKSMGEMLLGNHKENLP 257
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +1
Query: 382 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
++ F + D ++G+K Y + T +Q+ P + ++ +G +TGS
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGS 119
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 271 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 426
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 271 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 426
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 81 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 227
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
>At5g22420.1 68418.m02615 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 409
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 385 QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGSRQKRWP 549
Q+ E+ + +Q +K G K + GWP++YV+ + +G G ++ P
Sbjct: 132 QFKEQGCSEEETEQAMKDFGLKRA---RLYGWPNTYVFTKAMGEMLLGHYRETMP 183
>At1g15100.1 68414.m01803 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 155
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -3
Query: 275 FLLKGWSKQNPNLGV----ACSALQRILFSHQSLQILQIYCHRC 156
FLL+ SK NPNL V S L I+ L + +++ +RC
Sbjct: 33 FLLRLTSKSNPNLPVDDVSIASGLANIIVLADQLSLNRLFSYRC 76
>At4g33790.1 68417.m04796 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein;
No start codon identified, may contain anomalous
splicing at 5' end.
Length = 380
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/44 (22%), Positives = 26/44 (59%)
Frame = +1
Query: 409 PDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGSRQK 540
P+ + + +K +G + + GWP++YV+ + +G G++++
Sbjct: 104 PETITETMKDLGLRRA---KMYGWPNTYVFTKAMGEMMVGTKRE 144
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 262 VGVNRIPIWASHVLPSREFFF 200
VGV I W + +LPSR+F F
Sbjct: 81 VGVKEIEGWTARLLPSRQFGF 101
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/70 (21%), Positives = 32/70 (45%)
Frame = +1
Query: 322 VEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWK 501
+E+ ++ + + G + + F+ + + +K MG++ T IQA K
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 502 EFIGVXQTGS 531
+ +G +TGS
Sbjct: 128 DVLGAARTGS 137
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,013,134
Number of Sequences: 28952
Number of extensions: 245367
Number of successful extensions: 784
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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