Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0346.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   0.85 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   3.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   3.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   3.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   3.4  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    22   3.4  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    22   3.4  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    22   3.4  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = -3

Query: 158 KVEQSSEQPAGSIQPVAARRKFGRRHTC-LCRR 63
           KVE+ S  P  S+ P        R  TC +C R
Sbjct: 110 KVEEDSPSPTSSVSPEVKDSSRDRPFTCEVCNR 142


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 539 ESGDTYXANILRHTTSNXAK 598
           E GD Y   I  HT ++ AK
Sbjct: 533 EKGDEYYETISNHTDASSAK 552


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 539 ESGDTYXANILRHTTSNXAK 598
           E GD Y   I  HT ++ AK
Sbjct: 533 EKGDEYYETISNHTDASSAK 552


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 539 ESGDTYXANILRHTTSNXAK 598
           E GD Y   I  HT ++ AK
Sbjct: 533 EKGDEYYETISNHTDASSAK 552


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 539 ESGDTYXANILRHTTSNXAK 598
           E GD Y   I  HT ++ AK
Sbjct: 533 EKGDEYYETISNHTDASSAK 552


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 401 FYVFVIVIQSIIGFH*FLIILN 336
           FYV   V+  ++G+  F I+LN
Sbjct: 94  FYVVTTVLVVLVGYERFDILLN 115


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 401 FYVFVIVIQSIIGFH*FLIILN 336
           FYV   V+  ++G+  F I+LN
Sbjct: 94  FYVVTTVLVVLVGYERFDILLN 115


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 401 FYVFVIVIQSIIGFH*FLIILN 336
           FYV   V+  ++G+  F I+LN
Sbjct: 94  FYVVTTVLVVLVGYERFDILLN 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,335
Number of Sequences: 336
Number of extensions: 2548
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)