Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0346.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0275 + 3648866-3649951                                           28   4.9  
08_01_0203 + 1639993-1641141                                           28   6.5  
04_01_0255 - 3395548-3396129,3396203-3397834                           28   6.5  
04_01_0249 - 3284107-3286377                                           28   6.5  
12_02_0269 - 16617292-16618852,16622763-16623562                       27   8.6  

>04_01_0275 + 3648866-3649951
          Length = 361

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 423 RVLINLSILCFRDSHTK 373
           R+LIN S+ C RDSH K
Sbjct: 314 RLLINSSVKCMRDSHAK 330


>08_01_0203 + 1639993-1641141
          Length = 382

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 139 SNLLGVFSQLLHDESLVDVTLACAEGASIRAHKVI 35
           SN+LG  + LL D+   DVTL    G    AH+ +
Sbjct: 176 SNILGHLAGLLGDKGTADVTLV-VRGEEFAAHRAV 209


>04_01_0255 - 3395548-3396129,3396203-3397834
          Length = 737

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 423 RVLINLSILCFRDSHTK 373
           R+LIN S+ C RDSH K
Sbjct: 692 RLLINASVKCTRDSHAK 708


>04_01_0249 - 3284107-3286377
          Length = 756

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -2

Query: 423 RVLINLSILCFRDSHTK 373
           R LIN+SI C RDSH K
Sbjct: 704 RQLINVSIRCTRDSHAK 720


>12_02_0269 - 16617292-16618852,16622763-16623562
          Length = 786

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -3

Query: 155 VEQSSEQPAGSIQPVAARRKFGRRHTCLCRRCIHQSAQGNLFQ 27
           VE+S+E+    +  +   +   RRH  L RR  +QS +GNL Q
Sbjct: 503 VEKSTEE--NFVTVIRTDQDCLRRHNFLIRRLSYQSNRGNLIQ 543


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,368,772
Number of Sequences: 37544
Number of extensions: 260171
Number of successful extensions: 492
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)