Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0346.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55145| Best HMM Match : Kelch_1 (HMM E-Value=0)                     30   1.2  
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  

>SB_55145| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 625

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 184 DMGSEHYCLRWNNHQSNLLGVFSQLLHDESLVDVTLACAEGASIRAHKVI 35
           D+  + +    N+  S    + +QLL  E L DVT+   E   IR H+V+
Sbjct: 3   DILIQEFTYEANDLPSQAFTILTQLLEQEKLCDVTIKAGE-RKIRCHRVV 51


>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -3

Query: 569  RCSXGKYXHFXPPXPYSNGYISXKTSISCPKXGGIYV*DLWFPVIIK*VVYSLISPFYVF 390
            R + G +  F    PYSN + +    +     GG +V   +F   +    YSL+  F++F
Sbjct: 2535 RYTAGLFTEFTLYNPYSNLFTASTVLVEVLPTGGFHVRPEFFTFRL----YSLVGDFHIF 2590

Query: 389  VIV 381
             +V
Sbjct: 2591 TLV 2593


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,827,674
Number of Sequences: 59808
Number of extensions: 312603
Number of successful extensions: 562
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)