Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0346.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          75   7e-16
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      63   2e-12
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      53   2e-09
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.43 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.3  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   3.0  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   3.0  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 74.5 bits (175), Expect = 7e-16
 Identities = 33/52 (63%), Positives = 40/52 (76%)
 Frame = -1

Query: 190 SSDMGSEHYCLRWNNHQSNLLGVFSQLLHDESLVDVTLACAEGASIRAHKVI 35
           S  M  +HYCLRWNN+QSN+  VF QLL  E+ VDVTLAC E AS++AHKV+
Sbjct: 3   SGGMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNE-ASLKAHKVV 53


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 63.3 bits (147), Expect = 2e-12
 Identities = 25/47 (53%), Positives = 36/47 (76%)
 Frame = -1

Query: 175 SEHYCLRWNNHQSNLLGVFSQLLHDESLVDVTLACAEGASIRAHKVI 35
           ++H+CLRWNN+QS++   F  L  DE  VDVTLAC +G S++AH+V+
Sbjct: 4   TQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLAC-DGRSLKAHRVV 49


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 53.2 bits (122), Expect = 2e-09
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = -1

Query: 175 SEHYCLRWNNHQSNLLGVFSQLLHDESLVDVTLAC 71
           ++H+CLRWNN+QS++   F  L  DE  VDVTLAC
Sbjct: 4   TQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLAC 38


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 536  PPXPYSNGYISXKTSISCPKXGGIYV*D 453
            PP   +NG I+    I  P  GGIY  D
Sbjct: 1105 PPLSAANGVITGYKVIVIPSGGGIYTKD 1132


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 420 VLINLSILCFRDSHTKHNRISLIFNH 343
           +L N + L  +D+H+K   +S++F+H
Sbjct: 219 LLYNHARLMSQDNHSKEYLVSIMFSH 244


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 335 DFVGDIHISRPVSLSKAFNNRS 270
           DF+GDI+    VS   +F +R+
Sbjct: 62  DFLGDIYTEESVSALSSFYDRT 83


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 335 DFVGDIHISRPVSLSKAFNNRS 270
           DF+GDI+    VS   +F +R+
Sbjct: 77  DFLGDIYTEESVSALSSFYDRT 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,485
Number of Sequences: 438
Number of extensions: 2832
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)