Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0345.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    25   0.48 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.0  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   4.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   6.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   6.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   6.0  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   7.9  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    21   7.9  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 546 RASNLRSPXTSMPRYPQRFRYRXVHQQ 466
           R S   SP +S+P YP R +   V QQ
Sbjct: 474 RTSPQLSPMSSLPPYPNRTQITEVTQQ 500


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 250 HPRQVQRHHQVAGFQPAGRQG 188
           HP+  Q HHQ       G+QG
Sbjct: 175 HPQHHQPHHQQQHMMYGGQQG 195


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 250 HPRQVQRHHQVAGFQPAGRQG 188
           HP+  Q HHQ       G+QG
Sbjct: 177 HPQHHQPHHQQQHMMYGGQQG 197


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 314 SMKSTMEDEKLKEKISDSD 258
           S+ S  EDE+++ ++SD D
Sbjct: 18  SLLSKKEDEEVEHRLSDRD 36


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 108 LLRHPGTSS*LSDCKCLPILSACAHTPPCRPAGWNP 215
           +L+ P T     D K LP      H PP  P G NP
Sbjct: 720 MLQSPLTPHEAFDVK-LPPPPHPHHQPPRNPVGTNP 754


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 108 LLRHPGTSS*LSDCKCLPILSACAHTPPCRPAGWNP 215
           +L+ P T     D K LP      H PP  P G NP
Sbjct: 612 MLQSPLTPHEAFDVK-LPPPPHPHHQPPRNPVGTNP 646


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 71  PEPEVPPPGLEALAPPS 21
           P P+VPP  L  + PP+
Sbjct: 176 PLPQVPPLPLPPIFPPT 192


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 261 RVRDLFLELLIL 296
           RV+DLFLE ++L
Sbjct: 581 RVKDLFLEAVLL 592


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 386 KYRNEDDKQKETIQAKNALESY 321
           ++ N D  Q+ + +  NA ESY
Sbjct: 365 QFNNSDFVQRNSTEFDNATESY 386


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,473
Number of Sequences: 336
Number of extensions: 2450
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)