Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0344.Seq
(648 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q16RH9 Cluster: Temporarily assignedprotein name protei... 90 5e-17
UniRef50_Q4KTH7 Cluster: 60S acidic ribosomal protein P0; n=3; M... 88 2e-16
UniRef50_P05388 Cluster: 60S acidic ribosomal protein P0; n=171;... 76 6e-13
UniRef50_O04204 Cluster: 60S acidic ribosomal protein P0-1; n=27... 74 3e-12
UniRef50_Q9PV90 Cluster: 60S acidic ribosomal protein P0; n=11; ... 73 5e-12
UniRef50_Q9U7P1 Cluster: 60S acidic ribosomal protein P0; n=1; E... 73 6e-12
UniRef50_P57691 Cluster: 60S acidic ribosomal protein P0-3; n=10... 69 7e-11
UniRef50_P22685 Cluster: 60S acidic ribosomal protein P0; n=2; D... 66 7e-10
UniRef50_Q94660 Cluster: 60S acidic ribosomal protein P0; n=14; ... 61 2e-08
UniRef50_Q52H32 Cluster: 60S acidic ribosomal protein P0; n=4; E... 57 3e-07
UniRef50_A2EES5 Cluster: 60S acidic ribosomal protein P0; n=6; T... 57 3e-07
UniRef50_UPI0000499842 Cluster: 60S acidic ribosomal protein P0;... 53 7e-06
UniRef50_P26796 Cluster: 60S acidic ribosomal protein P0; n=12; ... 52 2e-05
UniRef50_Q22HK6 Cluster: 60S acidic ribosomal protein P0; n=2; T... 50 5e-05
UniRef50_A0DDF2 Cluster: 60S acidic ribosomal protein P0; n=6; P... 50 6e-05
UniRef50_Q8SRJ7 Cluster: 60S ACIDIC RIBOSOMAL PROTEIN P0; n=1; E... 48 2e-04
UniRef50_A6NF45 Cluster: Uncharacterized protein ENSP00000366648... 48 3e-04
UniRef50_P13553 Cluster: Acidic ribosomal protein P0 homolog; n=... 39 0.12
UniRef50_UPI000049883A Cluster: hypothetical protein 104.t00024;... 33 6.0
>UniRef50_Q16RH9 Cluster: Temporarily assignedprotein name protein;
n=2; Culicidae|Rep: Temporarily assignedprotein name
protein - Aedes aegypti (Yellowfever mosquito)
Length = 1309
Score = 89.8 bits (213), Expect = 5e-17
Identities = 43/61 (70%), Positives = 52/61 (85%)
Frame = -3
Query: 487 VKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 308
++QVY S IF+ +ILDIKPEDLRAKFQ GVAN+A +SL IGYPT+AS PH+IA GF+NL
Sbjct: 765 IEQVYGS--IFSPDILDIKPEDLRAKFQVGVANLAGVSLEIGYPTLASVPHNIAIGFRNL 822
Query: 307 L 305
L
Sbjct: 823 L 823
>UniRef50_Q4KTH7 Cluster: 60S acidic ribosomal protein P0; n=3;
Metazoa|Rep: 60S acidic ribosomal protein P0 - Suberites
domuncula (Sponge)
Length = 313
Score = 87.8 bits (208), Expect = 2e-16
Identities = 40/61 (65%), Positives = 49/61 (80%)
Frame = -3
Query: 487 VKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 308
+ QVYDS ++FA ILDI +DL +F +G+ANVAA+SL IGYPT+AS PHSI NGFKNL
Sbjct: 189 IVQVYDSGSVFAPSILDITEDDLIKQFMSGLANVAAVSLQIGYPTVASVPHSIVNGFKNL 248
Query: 307 L 305
L
Sbjct: 249 L 249
>UniRef50_P05388 Cluster: 60S acidic ribosomal protein P0; n=171;
Eukaryota|Rep: 60S acidic ribosomal protein P0 - Homo
sapiens (Human)
Length = 317
Score = 76.2 bits (179), Expect = 6e-13
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
V++QV+D+ +I+ E+LDI E L ++F GV NVA++ L IGYPT+AS PHSI NG+K
Sbjct: 188 VIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKR 247
Query: 310 LL 305
+L
Sbjct: 248 VL 249
>UniRef50_O04204 Cluster: 60S acidic ribosomal protein P0-1; n=27;
Eukaryota|Rep: 60S acidic ribosomal protein P0-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 317
Score = 73.7 bits (173), Expect = 3e-12
Identities = 32/62 (51%), Positives = 46/62 (74%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
VV+ VYD+ ++F E+L++ +DL KF AGV+ + ALSLAI YPT+A+APH N +KN
Sbjct: 191 VVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKN 250
Query: 310 LL 305
+L
Sbjct: 251 VL 252
>UniRef50_Q9PV90 Cluster: 60S acidic ribosomal protein P0; n=11;
Eukaryota|Rep: 60S acidic ribosomal protein P0 - Danio
rerio (Zebrafish) (Brachydanio rerio)
Length = 319
Score = 73.3 bits (172), Expect = 5e-12
Identities = 29/62 (46%), Positives = 47/62 (75%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
+++QVYD+ ++++ E+LDI + L +F GV N+A++ L IGYPT+AS PH+I NG+K
Sbjct: 191 IIQQVYDNGSVYSPEVLDITEDALHKRFLKGVRNIASVCLQIGYPTLASIPHTIINGYKR 250
Query: 310 LL 305
+L
Sbjct: 251 VL 252
>UniRef50_Q9U7P1 Cluster: 60S acidic ribosomal protein P0; n=1;
Eufolliculina uhligi|Rep: 60S acidic ribosomal protein
P0 - Eufolliculina uhligi
Length = 324
Score = 72.9 bits (171), Expect = 6e-12
Identities = 32/61 (52%), Positives = 45/61 (73%)
Frame = -3
Query: 487 VKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 308
VK VYD+ ++++ E+L + + L KF GV N+AA+SL +G PT ASAPHSI +GFKNL
Sbjct: 199 VKNVYDNGSVYSAEVLKLTNDILLGKFMNGVRNIAAMSLTLGIPTAASAPHSIVSGFKNL 258
Query: 307 L 305
+
Sbjct: 259 V 259
>UniRef50_P57691 Cluster: 60S acidic ribosomal protein P0-3; n=10;
Eukaryota|Rep: 60S acidic ribosomal protein P0-3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 323
Score = 69.3 bits (162), Expect = 7e-11
Identities = 28/62 (45%), Positives = 45/62 (72%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
VV+ VYD+ ++F+ E+LD+ + L KF +G++ V +L+LA+ YPT+A+APH N +KN
Sbjct: 190 VVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKN 249
Query: 310 LL 305
L
Sbjct: 250 AL 251
>UniRef50_P22685 Cluster: 60S acidic ribosomal protein P0; n=2;
Dictyostelium discoideum|Rep: 60S acidic ribosomal
protein P0 - Dictyostelium discoideum (Slime mold)
Length = 305
Score = 66.1 bits (154), Expect = 7e-10
Identities = 31/60 (51%), Positives = 42/60 (70%)
Frame = -3
Query: 484 KQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLL 305
K +YD+ ++ I + EDL KF+ G+ N+AA+SL IGYPT+AS PHS+ N FKNLL
Sbjct: 189 KIIYDAGACYSPSISE---EDLINKFKQGIFNIAAISLEIGYPTVASIPHSVMNAFKNLL 245
>UniRef50_Q94660 Cluster: 60S acidic ribosomal protein P0; n=14;
Apicomplexa|Rep: 60S acidic ribosomal protein P0 -
Plasmodium falciparum (isolate 7G8)
Length = 316
Score = 61.3 bits (142), Expect = 2e-08
Identities = 30/61 (49%), Positives = 38/61 (62%)
Frame = -3
Query: 487 VKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 308
V+ VYD I+ ++LDI ED+ KF GV+NVAALS A G T AS PH FKN+
Sbjct: 189 VRTVYDDGVIYDAKVLDITDEDILEKFSKGVSNVAALSRATGVITEASYPHVFVEAFKNI 248
Query: 307 L 305
+
Sbjct: 249 V 249
>UniRef50_Q52H32 Cluster: 60S acidic ribosomal protein P0; n=4;
Euplotes|Rep: 60S acidic ribosomal protein P0 - Euplotes
minuta
Length = 333
Score = 57.2 bits (132), Expect = 3e-07
Identities = 27/61 (44%), Positives = 39/61 (63%)
Frame = -3
Query: 487 VKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 308
V V+D+ ++ +LDI E + ++ ++NVA++SL G PT ASAPHSI FKNL
Sbjct: 207 VAHVFDNGNVYGPGVLDITSESIIESYKRVISNVASVSLESGIPTRASAPHSIMRVFKNL 266
Query: 307 L 305
L
Sbjct: 267 L 267
>UniRef50_A2EES5 Cluster: 60S acidic ribosomal protein P0; n=6;
Trichomonas vaginalis G3|Rep: 60S acidic ribosomal
protein P0 - Trichomonas vaginalis G3
Length = 318
Score = 57.2 bits (132), Expect = 3e-07
Identities = 25/60 (41%), Positives = 38/60 (63%)
Frame = -3
Query: 487 VKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 308
++ +YD ++ IL I E L KF+ G+ NV L+LA+GYP ASAPH + + FK++
Sbjct: 191 IEALYDHGNMYDPSILAITEEVLGEKFRTGLRNVTGLALAVGYPCAASAPHLVGSAFKDI 250
>UniRef50_UPI0000499842 Cluster: 60S acidic ribosomal protein P0;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: 60S acidic
ribosomal protein P0 - Entamoeba histolytica HM-1:IMSS
Length = 316
Score = 52.8 bits (121), Expect = 7e-06
Identities = 25/62 (40%), Positives = 36/62 (58%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
V+ VYD+ ++ + LD+ D+ KFQ GV A+SLA PT A+ PH + N F+
Sbjct: 195 VIDVVYDNGIVYDAKALDLTESDIVKKFQEGVQAATAISLAANLPTEAACPHLMLNAFQA 254
Query: 310 LL 305
LL
Sbjct: 255 LL 256
>UniRef50_P26796 Cluster: 60S acidic ribosomal protein P0; n=12;
Trypanosomatidae|Rep: 60S acidic ribosomal protein P0 -
Trypanosoma cruzi
Length = 323
Score = 51.6 bits (118), Expect = 2e-05
Identities = 26/61 (42%), Positives = 35/61 (57%)
Frame = -3
Query: 487 VKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 308
V+ V+D +F E L I + + G++NVAALSL G PT A+ PH I + FK L
Sbjct: 196 VQSVWDRGMLFLREDLSITDDVVEKYLLEGISNVAALSLGAGIPTAATLPHMIMDAFKTL 255
Query: 307 L 305
L
Sbjct: 256 L 256
>UniRef50_Q22HK6 Cluster: 60S acidic ribosomal protein P0; n=2;
Tetrahymena thermophila|Rep: 60S acidic ribosomal
protein P0 - Tetrahymena thermophila SB210
Length = 324
Score = 50.0 bits (114), Expect = 5e-05
Identities = 24/56 (42%), Positives = 30/56 (53%)
Frame = -3
Query: 475 YDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 308
YD+ I E+L I P + F +AA+SLA GY T S PH I N FK+L
Sbjct: 211 YDNGEILTEEVLSISPSVILDAFAQNTLRIAAVSLATGYVTAPSVPHFIQNAFKDL 266
>UniRef50_A0DDF2 Cluster: 60S acidic ribosomal protein P0; n=6;
Paramecium tetraurelia|Rep: 60S acidic ribosomal protein
P0 - Paramecium tetraurelia
Length = 323
Score = 49.6 bits (113), Expect = 6e-05
Identities = 24/56 (42%), Positives = 36/56 (64%)
Frame = -3
Query: 475 YDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 308
YD+ +I + + + D+ AKFQ V NV+A+SL G+ ASAP+ +AN FK+L
Sbjct: 211 YDNGSILNKQQVSVNLNDIVAKFQQNVRNVSAISLQNGWVNEASAPYLLANAFKDL 266
>UniRef50_Q8SRJ7 Cluster: 60S ACIDIC RIBOSOMAL PROTEIN P0; n=1;
Encephalitozoon cuniculi|Rep: 60S ACIDIC RIBOSOMAL
PROTEIN P0 - Encephalitozoon cuniculi
Length = 290
Score = 48.0 bits (109), Expect = 2e-04
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = -3
Query: 481 QVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLL 305
Q+Y+ I+ ++DI ED+ + ++ VAA SL G T AS P+++ N FK++L
Sbjct: 213 QIYEDGVIYDSSLIDIGEEDIFTSLRNAISTVAAASLGAGVITQASMPYNVRNAFKDIL 271
>UniRef50_A6NF45 Cluster: Uncharacterized protein ENSP00000366648;
n=12; Gnathostomata|Rep: Uncharacterized protein
ENSP00000366648 - Homo sapiens (Human)
Length = 99
Score = 47.6 bits (108), Expect = 3e-04
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = -3
Query: 397 VANVAALSLAIGYPTIASAPHSIANGFKNLL 305
V NVA++ L IGYPT+AS PHSI NG+K +L
Sbjct: 1 VRNVASVCLQIGYPTVASVPHSIINGYKRVL 31
>UniRef50_P13553 Cluster: Acidic ribosomal protein P0 homolog; n=6;
Halobacteriaceae|Rep: Acidic ribosomal protein P0
homolog - Halobacterium salinarium (Halobacterium
halobium)
Length = 352
Score = 38.7 bits (86), Expect = 0.12
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = -3
Query: 487 VKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANG 320
++ V+ +F E L+I ++ RA Q+ A+ LS+ YPT +AP IA G
Sbjct: 193 LRGVFSEGVLFTPEELEIDVDEYRADIQSAAASARNLSVNAAYPTERTAPDLIAKG 248
>UniRef50_UPI000049883A Cluster: hypothetical protein 104.t00024;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 104.t00024 - Entamoeba histolytica HM-1:IMSS
Length = 148
Score = 33.1 bits (72), Expect = 6.0
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 278 LNLCDSS--DGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSLELGTEILWFDVQN 445
LN C++ + + +E GD + N+ + S+ +S+IS S EL +I W QN
Sbjct: 15 LNQCNNEIQEIDRKMEETGDSLEVIKNTMIQQSKMMNSFISEKSFELTKKIQWNGNQN 72
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 468,382,886
Number of Sequences: 1657284
Number of extensions: 7084140
Number of successful extensions: 14704
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14701
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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