Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0344.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    58   1e-09
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   3.1  
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    25   7.1  
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    25   7.1  
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    25   7.1  
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    25   7.1  
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    25   7.1  
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    25   7.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.4  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 25/61 (40%), Positives = 36/61 (59%)
 Frame = -3

Query: 487 VKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 308
           V  +YD   +F+ EILD+  EDL     +  + + A+SL   YPTI S  HS+ N +KNL
Sbjct: 187 VLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNL 246

Query: 307 L 305
           +
Sbjct: 247 V 247



 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -2

Query: 134 DDDMGFGLFD 105
           D+DMGFGLFD
Sbjct: 303 DEDMGFGLFD 312


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +2

Query: 254 LDGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSLELGTEILWF 433
           + G S+       SSDG    + + D ++  + SWV  ++R S  IS S  E+  +   F
Sbjct: 86  IQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED---F 141

Query: 434 DVQNF 448
           D++ F
Sbjct: 142 DIEAF 146


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -2

Query: 134 DDDMGFGLFD 105
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -2

Query: 134 DDDMGFGLFD 105
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -2

Query: 134 DDDMGFGLFD 105
           D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -2

Query: 134 DDDMGFGLFD 105
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -2

Query: 134 DDDMGFGLFD 105
           D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -2

Query: 134 DDDMGFGLFD 105
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +2

Query: 257  DGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSLELGTEI 424
            D G   +  +C+ +D  ++++T    +     +++S    KS  + N   EL TE+
Sbjct: 1022 DAGIASRCEICEINDKNEIVKTRSQRIHSKKKAFLSLVPDKSIGVINRYKELATEL 1077


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,916,231
Number of Sequences: 5004
Number of extensions: 28787
Number of successful extensions: 53
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)