Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0344.Seq
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160...    80   1e-15
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164...    80   1e-15
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171...    79   3e-15
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290...    30   1.4  
03_02_0966 + 12783515-12783901                                         30   1.8  
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85...    29   3.2  
02_04_0571 - 23963088-23963174,23963265-23963512,23963913-239639...    27   9.7  

>12_01_0211 -
           1601129-1601272,1601670-1602062,1602142-1602240,
           1602920-1602988,1603071-1603328
          Length = 320

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 35/62 (56%), Positives = 48/62 (77%)
 Frame = -3

Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
           V+  VYDS ++F+ E+LD+  EDL  KF +GV+ VA++SLAI YPTIA+APH   NG+KN
Sbjct: 191 VITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKN 250

Query: 310 LL 305
           +L
Sbjct: 251 VL 252


>11_01_0210 -
           1647922-1648065,1648459-1648851,1648930-1649028,
           1649706-1649774,1649877-1650134
          Length = 320

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 35/62 (56%), Positives = 48/62 (77%)
 Frame = -3

Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
           V+  VYDS ++F+ E+LD+  EDL  KF +GV+ VA++SLAI YPTIA+APH   NG+KN
Sbjct: 191 VITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKN 250

Query: 310 LL 305
           +L
Sbjct: 251 VL 252


>08_01_0215 -
           1714224-1714364,1714795-1715187,1715279-1715377,
           1716248-1716316,1716408-1716665
          Length = 319

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 34/62 (54%), Positives = 48/62 (77%)
 Frame = -3

Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
           V+  VYDS ++F+ E+LD+  +DL  KF +GV+ VA++SLAI YPTIA+APH   NG+KN
Sbjct: 191 VITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKN 250

Query: 310 LL 305
           +L
Sbjct: 251 VL 252


>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
            2907650-2907790,2907870-2908043,2908577-2908851,
            2909592-2909755,2910409-2910536,2910628-2910734,
            2911747-2911880,2912266-2912441,2912530-2914257,
            2915084-2915239,2915328-2915486,2915581-2915751,
            2915931-2916047,2916417-2916473,2916565-2916680,
            2916790-2916916,2917862-2917945
          Length = 2056

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +2

Query: 185  ERRRRTVPPRQQLQRTSMGP**TLDGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVS 364
            E+ + +  P Q    +  GP    DGG+ +K      +DG    E  G G  G   SW  
Sbjct: 1483 EKEKISEEPAQHDAWSVQGPKRATDGGASWKKQSSTQNDGNSWKENKGRGSNG--GSWEK 1540

Query: 365  NSQRKSSY 388
            ++ +K S+
Sbjct: 1541 DNAQKGSW 1548


>03_02_0966 + 12783515-12783901
          Length = 128

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 403 AGVANVAALSLAIGYPTIASAPHSIANGFKNLL 305
           AG+A VAA++ A+  P +A A  +++   KN L
Sbjct: 67  AGIAAVAAVAAALAVPEVAEAAPALSPSLKNFL 99


>07_01_0115 +
           851505-852368,852611-852730,853000-853020,853253-853369,
           853466-853555,853730-853837,853897-853932,853933-854022
          Length = 481

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 430 PEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFK 314
           PE  RA F AG A V A      +P  A+A +S   GF+
Sbjct: 35  PEKKRASFAAGAAAVRAKVCDARWPASAAAANSAPYGFR 73


>02_04_0571 -
           23963088-23963174,23963265-23963512,23963913-23963999,
           23964023-23964143,23964257-23964366,23964464-23964635,
           23965615-23965648,23965830-23965849
          Length = 292

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -2

Query: 455 CT*NSGHQTRGSPCQVPSWXXXXXXSFFGYWIPNYCFS 342
           C+ + GH  +GS C++ +W           W+ +  FS
Sbjct: 241 CSHSGGHALQGSECELTTWSATKQQKSGKIWLKDIIFS 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,926,625
Number of Sequences: 37544
Number of extensions: 207425
Number of successful extensions: 399
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)