Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0344.Seq
(648 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17885-1|AAA36470.1| 317|Homo sapiens protein ( Human acidic ri... 76 9e-14
BC104645-1|AAI04646.1| 157|Homo sapiens RPLP0 protein protein. 76 9e-14
BC015690-1|AAH15690.1| 317|Homo sapiens ribosomal protein, larg... 76 9e-14
BC015173-1|AAH15173.1| 317|Homo sapiens ribosomal protein, larg... 76 9e-14
BC009867-1|AAH09867.1| 317|Homo sapiens ribosomal protein, larg... 76 9e-14
BC008594-1|AAH08594.1| 317|Homo sapiens ribosomal protein, larg... 76 9e-14
BC008092-1|AAH08092.1| 317|Homo sapiens ribosomal protein, larg... 76 9e-14
BC005863-1|AAH05863.1| 317|Homo sapiens ribosomal protein, larg... 76 9e-14
BC003655-1|AAH03655.1| 317|Homo sapiens ribosomal protein, larg... 76 9e-14
BC001834-1|AAH01834.1| 317|Homo sapiens ribosomal protein, larg... 76 9e-14
BC000752-1|AAH00752.1| 317|Homo sapiens ribosomal protein, larg... 76 9e-14
BC000345-1|AAH00345.1| 317|Homo sapiens ribosomal protein, larg... 76 9e-14
BC000087-1|AAH00087.1| 317|Homo sapiens ribosomal protein, larg... 76 9e-14
AK222571-1|BAD96291.1| 317|Homo sapiens ribosomal protein P0 va... 76 9e-14
AK222468-1|BAD96188.1| 317|Homo sapiens ribosomal protein P0 va... 76 9e-14
AC004263-1|AAC05176.1| 317|Homo sapiens WUGSC:H_278C19.2 protein. 76 9e-14
BC001127-1|AAH01127.1| 317|Homo sapiens ribosomal protein, larg... 75 3e-13
AY064377-1|AAL62450.1| 317|Homo sapiens BLOCK 23 protein. 71 3e-12
BC107717-1|AAI07718.1| 255|Homo sapiens RPLP0 protein protein. 50 7e-06
BC070194-1|AAH70194.1| 254|Homo sapiens RPLP0 protein protein. 50 7e-06
AB007187-1|BAA25845.1| 93|Homo sapiens ribosomal protein P0 pr... 50 7e-06
>M17885-1|AAA36470.1| 317|Homo sapiens protein ( Human acidic
ribosomal phosphoprotein P0 mRNA, complete cds. ).
Length = 317
Score = 76.2 bits (179), Expect = 9e-14
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
V++QV+D+ +I+ E+LDI E L ++F GV NVA++ L IGYPT+AS PHSI NG+K
Sbjct: 188 VIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKR 247
Query: 310 LL 305
+L
Sbjct: 248 VL 249
>BC104645-1|AAI04646.1| 157|Homo sapiens RPLP0 protein protein.
Length = 157
Score = 76.2 bits (179), Expect = 9e-14
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
V++QV+D+ +I+ E+LDI E L ++F GV NVA++ L IGYPT+AS PHSI NG+K
Sbjct: 28 VIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKR 87
Query: 310 LL 305
+L
Sbjct: 88 VL 89
>BC015690-1|AAH15690.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 76.2 bits (179), Expect = 9e-14
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
V++QV+D+ +I+ E+LDI E L ++F GV NVA++ L IGYPT+AS PHSI NG+K
Sbjct: 188 VIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKR 247
Query: 310 LL 305
+L
Sbjct: 248 VL 249
>BC015173-1|AAH15173.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 76.2 bits (179), Expect = 9e-14
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
V++QV+D+ +I+ E+LDI E L ++F GV NVA++ L IGYPT+AS PHSI NG+K
Sbjct: 188 VIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKR 247
Query: 310 LL 305
+L
Sbjct: 248 VL 249
>BC009867-1|AAH09867.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 76.2 bits (179), Expect = 9e-14
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
V++QV+D+ +I+ E+LDI E L ++F GV NVA++ L IGYPT+AS PHSI NG+K
Sbjct: 188 VIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKR 247
Query: 310 LL 305
+L
Sbjct: 248 VL 249
>BC008594-1|AAH08594.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 76.2 bits (179), Expect = 9e-14
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
V++QV+D+ +I+ E+LDI E L ++F GV NVA++ L IGYPT+AS PHSI NG+K
Sbjct: 188 VIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKR 247
Query: 310 LL 305
+L
Sbjct: 248 VL 249
>BC008092-1|AAH08092.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 76.2 bits (179), Expect = 9e-14
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
V++QV+D+ +I+ E+LDI E L ++F GV NVA++ L IGYPT+AS PHSI NG+K
Sbjct: 188 VIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKR 247
Query: 310 LL 305
+L
Sbjct: 248 VL 249
>BC005863-1|AAH05863.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 76.2 bits (179), Expect = 9e-14
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
V++QV+D+ +I+ E+LDI E L ++F GV NVA++ L IGYPT+AS PHSI NG+K
Sbjct: 188 VIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKR 247
Query: 310 LL 305
+L
Sbjct: 248 VL 249
>BC003655-1|AAH03655.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 76.2 bits (179), Expect = 9e-14
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
V++QV+D+ +I+ E+LDI E L ++F GV NVA++ L IGYPT+AS PHSI NG+K
Sbjct: 188 VIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKR 247
Query: 310 LL 305
+L
Sbjct: 248 VL 249
>BC001834-1|AAH01834.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 76.2 bits (179), Expect = 9e-14
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
V++QV+D+ +I+ E+LDI E L ++F GV NVA++ L IGYPT+AS PHSI NG+K
Sbjct: 188 VIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKR 247
Query: 310 LL 305
+L
Sbjct: 248 VL 249
>BC000752-1|AAH00752.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 76.2 bits (179), Expect = 9e-14
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
V++QV+D+ +I+ E+LDI E L ++F GV NVA++ L IGYPT+AS PHSI NG+K
Sbjct: 188 VIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKR 247
Query: 310 LL 305
+L
Sbjct: 248 VL 249
>BC000345-1|AAH00345.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 76.2 bits (179), Expect = 9e-14
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
V++QV+D+ +I+ E+LDI E L ++F GV NVA++ L IGYPT+AS PHSI NG+K
Sbjct: 188 VIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKR 247
Query: 310 LL 305
+L
Sbjct: 248 VL 249
>BC000087-1|AAH00087.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 76.2 bits (179), Expect = 9e-14
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
V++QV+D+ +I+ E+LDI E L ++F GV NVA++ L IGYPT+AS PHSI NG+K
Sbjct: 188 VIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKR 247
Query: 310 LL 305
+L
Sbjct: 248 VL 249
>AK222571-1|BAD96291.1| 317|Homo sapiens ribosomal protein P0
variant protein.
Length = 317
Score = 76.2 bits (179), Expect = 9e-14
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
V++QV+D+ +I+ E+LDI E L ++F GV NVA++ L IGYPT+AS PHSI NG+K
Sbjct: 188 VIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKR 247
Query: 310 LL 305
+L
Sbjct: 248 VL 249
>AK222468-1|BAD96188.1| 317|Homo sapiens ribosomal protein P0
variant protein.
Length = 317
Score = 76.2 bits (179), Expect = 9e-14
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
V++QV+D+ +I+ E+LDI E L ++F GV NVA++ L IGYPT+AS PHSI NG+K
Sbjct: 188 VIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKR 247
Query: 310 LL 305
+L
Sbjct: 248 VL 249
>AC004263-1|AAC05176.1| 317|Homo sapiens WUGSC:H_278C19.2 protein.
Length = 317
Score = 76.2 bits (179), Expect = 9e-14
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
V++QV+D+ +I+ E+LDI E L ++F GV NVA++ L IGYPT+AS PHSI NG+K
Sbjct: 188 VIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKR 247
Query: 310 LL 305
+L
Sbjct: 248 VL 249
>BC001127-1|AAH01127.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 74.5 bits (175), Expect = 3e-13
Identities = 32/62 (51%), Positives = 47/62 (75%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
V++QV+D+ +I+ E+LDI E L ++F GV NVA++ L IGYPT+AS PHSI NG++
Sbjct: 188 VIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYER 247
Query: 310 LL 305
+L
Sbjct: 248 VL 249
>AY064377-1|AAL62450.1| 317|Homo sapiens BLOCK 23 protein.
Length = 317
Score = 71.3 bits (167), Expect = 3e-12
Identities = 31/62 (50%), Positives = 45/62 (72%)
Frame = -3
Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
V++QV+D+ +I+ E+LD E L ++F GV NVA++ L GYPT+AS PHSI NG+K
Sbjct: 188 VIQQVFDNGSIYNPEVLDKTEETLHSRFLEGVRNVASVCLQTGYPTVASVPHSIINGYKR 247
Query: 310 LL 305
+L
Sbjct: 248 VL 249
>BC107717-1|AAI07718.1| 255|Homo sapiens RPLP0 protein protein.
Length = 255
Score = 50.0 bits (114), Expect = 7e-06
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = -3
Query: 400 GVANVAALSLAIGYPTIASAPHSIANGFKNLL 305
GV NVA++ L IGYPT+AS PHSI NG+K +L
Sbjct: 156 GVRNVASVCLQIGYPTVASVPHSIINGYKRVL 187
>BC070194-1|AAH70194.1| 254|Homo sapiens RPLP0 protein protein.
Length = 254
Score = 50.0 bits (114), Expect = 7e-06
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = -3
Query: 400 GVANVAALSLAIGYPTIASAPHSIANGFKNLL 305
GV NVA++ L IGYPT+AS PHSI NG+K +L
Sbjct: 155 GVRNVASVCLQIGYPTVASVPHSIINGYKRVL 186
>AB007187-1|BAA25845.1| 93|Homo sapiens ribosomal protein P0
protein.
Length = 93
Score = 50.0 bits (114), Expect = 7e-06
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = -3
Query: 400 GVANVAALSLAIGYPTIASAPHSIANGFKNLL 305
GV NVA++ L IGYPT+AS PHSI NG+K +L
Sbjct: 1 GVRNVASVCLQIGYPTVASVPHSIINGYKRVL 32
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,248,321
Number of Sequences: 237096
Number of extensions: 1128377
Number of successful extensions: 2014
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2014
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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