Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0344.Seq
         (648 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair pro...   108   7e-24
BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p pro...   108   7e-24
AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p pro...   108   7e-24
AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA...   108   7e-24

>M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair
           protein protein.
          Length = 317

 Score =  108 bits (259), Expect = 7e-24
 Identities = 50/62 (80%), Positives = 57/62 (91%)
 Frame = -3

Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
           +V QVYDS +IF+ EILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIASAPHSIANGFKN
Sbjct: 188 IVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKN 247

Query: 310 LL 305
           LL
Sbjct: 248 LL 249



 Score = 32.7 bits (71), Expect = 0.44
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 632 SLP-KISXGVLXKFINXEHILKPGYQGXXFLKPPXLNMLNIXSFXYGL 492
           S+P KIS G + + IN   ILKPG +     +   LNMLNI  F YGL
Sbjct: 142 SIPTKISKGTI-EIINDVPILKPGDK-VGASEATLLNMLNISPFSYGL 187


>BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p
           protein.
          Length = 317

 Score =  108 bits (259), Expect = 7e-24
 Identities = 50/62 (80%), Positives = 57/62 (91%)
 Frame = -3

Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
           +V QVYDS +IF+ EILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIASAPHSIANGFKN
Sbjct: 188 IVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKN 247

Query: 310 LL 305
           LL
Sbjct: 248 LL 249



 Score = 32.7 bits (71), Expect = 0.44
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 632 SLP-KISXGVLXKFINXEHILKPGYQGXXFLKPPXLNMLNIXSFXYGL 492
           S+P KIS G + + IN   ILKPG +     +   LNMLNI  F YGL
Sbjct: 142 SIPTKISKGTI-EIINDVPILKPGDK-VGASEATLLNMLNISPFSYGL 187


>AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p
           protein.
          Length = 317

 Score =  108 bits (259), Expect = 7e-24
 Identities = 50/62 (80%), Positives = 57/62 (91%)
 Frame = -3

Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
           +V QVYDS +IF+ EILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIASAPHSIANGFKN
Sbjct: 188 IVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKN 247

Query: 310 LL 305
           LL
Sbjct: 248 LL 249



 Score = 32.7 bits (71), Expect = 0.44
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 632 SLP-KISXGVLXKFINXEHILKPGYQGXXFLKPPXLNMLNIXSFXYGL 492
           S+P KIS G + + IN   ILKPG +     +   LNMLNI  F YGL
Sbjct: 142 SIPTKISKGTI-EIINDVPILKPGDK-VGASEATLLNMLNISPFSYGL 187


>AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA
           protein.
          Length = 317

 Score =  108 bits (259), Expect = 7e-24
 Identities = 50/62 (80%), Positives = 57/62 (91%)
 Frame = -3

Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
           +V QVYDS +IF+ EILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIASAPHSIANGFKN
Sbjct: 188 IVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKN 247

Query: 310 LL 305
           LL
Sbjct: 248 LL 249



 Score = 32.7 bits (71), Expect = 0.44
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 632 SLP-KISXGVLXKFINXEHILKPGYQGXXFLKPPXLNMLNIXSFXYGL 492
           S+P KIS G + + IN   ILKPG +     +   LNMLNI  F YGL
Sbjct: 142 SIPTKISKGTI-EIINDVPILKPGDK-VGASEATLLNMLNISPFSYGL 187


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,131,680
Number of Sequences: 53049
Number of extensions: 340437
Number of successful extensions: 678
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)