Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0344.Seq
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)       74   9e-14
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...    69   2e-12
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...    69   2e-12
At5g56870.1 68418.m07097 beta-galactosidase, putative / lactase,...    28   6.1  

>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score = 73.7 bits (173), Expect = 9e-14
 Identities = 32/62 (51%), Positives = 46/62 (74%)
 Frame = -3

Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
           VV+ VYD+ ++F  E+L++  +DL  KF AGV+ + ALSLAI YPT+A+APH   N +KN
Sbjct: 191 VVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKN 250

Query: 310 LL 305
           +L
Sbjct: 251 VL 252


>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 28/62 (45%), Positives = 45/62 (72%)
 Frame = -3

Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
           VV+ VYD+ ++F+ E+LD+  + L  KF +G++ V +L+LA+ YPT+A+APH   N +KN
Sbjct: 190 VVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKN 249

Query: 310 LL 305
            L
Sbjct: 250 AL 251


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 28/62 (45%), Positives = 45/62 (72%)
 Frame = -3

Query: 490 VVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKN 311
           VV+ VYD+ ++F+ E+LD+  + L  KF +G++ V +L+LA+ YPT+A+APH   N +KN
Sbjct: 190 VVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKN 249

Query: 310 LL 305
            L
Sbjct: 250 AL 251


>At5g56870.1 68418.m07097 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase precursor
           GI:3869280 from [Carica papaya]
          Length = 724

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -3

Query: 535 PFSTC*TSSHSXMVFVVKQVYDSXTIFAXEILDIKPEDLRAKFQAGVANVAALSLAIGYP 356
           P  T  ++ H+  VFV  Q+  S T +            + K  AGV  +A LS+A+G P
Sbjct: 491 PLLTVMSAGHALHVFVNGQL--SGTAYGGLDHPKLTFSQKIKLHAGVNKIALLSVAVGLP 548

Query: 355 TIAS 344
            + +
Sbjct: 549 NVGT 552


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,219,822
Number of Sequences: 28952
Number of extensions: 159373
Number of successful extensions: 288
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)