Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0343.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803...    29   2.1  
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553...    27   6.3  
12_02_0031 - 12477787-12478413,12480182-12480268,12480371-124805...    27   8.4  
08_01_0143 - 1125211-1126414,1129217-1129368                           27   8.4  
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344...    27   8.4  

>04_04_0141 +
           23079516-23079925,23080006-23080084,23080204-23080326,
           23081655-23081771,23081886-23081945
          Length = 262

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +2

Query: 71  KNESTKRGTAITIFKCIHKLKTTQSHKVMQGLLKLMFPFVIPRSYHHGSRCRCLRNCFDY 250
           K ES      +T+ K       T+  K+  G+LKL+   ++P S    S+   L+   DY
Sbjct: 76  KEESRGNEDRVTLIKDYRGKIETELTKICDGILKLLESHLVPSSTAPESKVFYLKMKGDY 135

Query: 251 Y 253
           Y
Sbjct: 136 Y 136


>02_04_0360 +
           22353057-22353691,22354716-22355144,22355233-22355311,
           22355472-22355594,22356256-22356372,22356636-22356833
          Length = 526

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 71  KNESTKRGTAITIFKCIHKLKTTQSHKVMQGLLKLMFPFVIPRSYHHGSRCRCLRNCFDY 250
           K ES       T+ K       T+  K+  G+LKL+   ++P S    S+   L+   DY
Sbjct: 294 KEESRGNEDRCTLIKEYRGKIETELSKICDGILKLLDSHLVPSSTAPESKVFYLKMKGDY 353

Query: 251 Y 253
           Y
Sbjct: 354 Y 354


>12_02_0031 -
           12477787-12478413,12480182-12480268,12480371-12480562,
           12480638-12480766,12480840-12480926,12483076-12483537,
           12485088-12485222
          Length = 572

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 201 LRGMTNGNINFNKPCITLWLCVVLSL*MHLKIVMAVP 91
           L G+T G  N     +TL++C+VL   + + I   VP
Sbjct: 406 LTGLTRGGSNIAYFVVTLYMCIVLVESIMMVIAAVVP 442


>08_01_0143 - 1125211-1126414,1129217-1129368
          Length = 451

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +2

Query: 77  ESTKRGTAITIFKCIHKLKTTQSHKVMQGLLKLMFPFVIPR-----SYHHGSR 220
           EST+      +  CI+K+   +   ++Q L    + + +P       YHHG+R
Sbjct: 30  ESTETALGAEVHLCINKIMIHRYPAILQNLKMDYYRYFVPSVVAIGPYHHGAR 82


>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
            29334956-29335045,29335120-29335155,29335222-29336553,
            29337331-29337497,29337519-29337724,29337815-29338036,
            29338332-29338381,29338754-29338870,29339471-29339551,
            29339656-29339694,29340464-29340636,29340769-29340826,
            29340934-29340987,29341066-29341613,29341695-29341755,
            29342180-29342260,29342448-29342630,29342908-29343162,
            29343304-29343423,29343497-29344901,29344988-29345085,
            29345164-29345218,29345307-29345366,29346498-29346697
          Length = 2077

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 140  QSHKVMQGLLKLMFPFVIPRSYHHGSRC 223
            +S  ++Q L KLM PF  P  Y   S C
Sbjct: 1861 KSKVIVQRLSKLMEPFAFPSDYSRTSSC 1888


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,488,672
Number of Sequences: 37544
Number of extensions: 140806
Number of successful extensions: 258
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)