Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0342.Seq
         (449 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6DGH3 Cluster: Zgc:92922; n=13; Euteleostomi|Rep: Zgc:...    68   1e-10
UniRef50_P60468 Cluster: Protein transport protein Sec61 subunit...    68   1e-10
UniRef50_Q5BSB6 Cluster: SJCHGC05179 protein; n=3; Bilateria|Rep...    46   4e-04
UniRef50_P38389 Cluster: Protein transport protein Sec61 subunit...    35   0.71 
UniRef50_A7PR73 Cluster: Chromosome chr14 scaffold_26, whole gen...    33   2.2  
UniRef50_A2EC85 Cluster: Putative uncharacterized protein; n=1; ...    33   2.9  
UniRef50_Q0JLV5 Cluster: Os01g0565900 protein; n=3; Magnoliophyt...    33   3.8  
UniRef50_A4RRJ9 Cluster: Predicted protein; n=1; Ostreococcus lu...    32   5.0  
UniRef50_Q5LBL8 Cluster: Putative glycosyltransferase protein; n...    32   6.6  
UniRef50_A7PTV2 Cluster: Chromosome chr7 scaffold_31, whole geno...    31   8.8  

>UniRef50_Q6DGH3 Cluster: Zgc:92922; n=13; Euteleostomi|Rep:
           Zgc:92922 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 97

 Score = 67.7 bits (158), Expect = 1e-10
 Identities = 30/45 (66%), Positives = 33/45 (73%)
 Frame = +3

Query: 255 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 389
           +GGMWRFYT+DS            MSLLFIASVFMLHIWGKYTR+
Sbjct: 53  TGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 97


>UniRef50_P60468 Cluster: Protein transport protein Sec61 subunit
           beta; n=31; Eukaryota|Rep: Protein transport protein
           Sec61 subunit beta - Homo sapiens (Human)
          Length = 96

 Score = 67.7 bits (158), Expect = 1e-10
 Identities = 30/45 (66%), Positives = 33/45 (73%)
 Frame = +3

Query: 255 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 389
           +GGMWRFYT+DS            MSLLFIASVFMLHIWGKYTR+
Sbjct: 52  TGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96


>UniRef50_Q5BSB6 Cluster: SJCHGC05179 protein; n=3; Bilateria|Rep:
           SJCHGC05179 protein - Schistosoma japonicum (Blood
           fluke)
          Length = 88

 Score = 46.0 bits (104), Expect = 4e-04
 Identities = 20/39 (51%), Positives = 24/39 (61%)
 Frame = +3

Query: 273 FYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 389
           FY++DS            MSL FI SVF+LH WGKYTR+
Sbjct: 49  FYSEDSPGIKVGPVPVLVMSLCFIVSVFLLHFWGKYTRS 87


>UniRef50_P38389 Cluster: Protein transport protein Sec61 subunit
           beta; n=13; Magnoliophyta|Rep: Protein transport protein
           Sec61 subunit beta - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 82

 Score = 35.1 bits (77), Expect = 0.71
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 255 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 377
           +G M +FYTDD+            MS+ FIA V +LH+ GK
Sbjct: 37  AGSMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 77


>UniRef50_A7PR73 Cluster: Chromosome chr14 scaffold_26, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr14 scaffold_26, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 166

 Score = 33.5 bits (73), Expect = 2.2
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = +3

Query: 216 YYNCSQKPKHWCWSGGMW----RFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYT 383
           +Y+C         SG  W    RFYTDD+             SL FI  V  LH++G+  
Sbjct: 15  HYHCRSTLTQRFSSGNSWSNLLRFYTDDAPGLKITPMVVLVTSLCFIGFVVALHVFGEIY 74

Query: 384 R 386
           R
Sbjct: 75  R 75


>UniRef50_A2EC85 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 848

 Score = 33.1 bits (72), Expect = 2.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 150 G*STPRSYRGSTRRLRHFYSNVVKLYFKSDIH 55
           G S P  Y+  TR   H+Y ++ K+YF  DIH
Sbjct: 442 GESYPNRYKPGTRHDDHYYVSIDKIYFFPDIH 473


>UniRef50_Q0JLV5 Cluster: Os01g0565900 protein; n=3;
           Magnoliophyta|Rep: Os01g0565900 protein - Oryza sativa
           subsp. japonica (Rice)
          Length = 80

 Score = 32.7 bits (71), Expect = 3.8
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 264 MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTR 386
           M +FYTD++            MS+ FIA V +LH++GK  R
Sbjct: 37  MLQFYTDEAAGRKMSPNSVLIMSIGFIAVVALLHVFGKLYR 77


>UniRef50_A4RRJ9 Cluster: Predicted protein; n=1; Ostreococcus
           lucimarinus CCE9901|Rep: Predicted protein -
           Ostreococcus lucimarinus CCE9901
          Length = 76

 Score = 32.3 bits (70), Expect = 5.0
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +3

Query: 255 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 377
           SG + RFYTD+S            MS+ FI  V MLH   K
Sbjct: 26  SGSLLRFYTDESPGLKITPVVVLGMSVCFIGFVTMLHAIAK 66


>UniRef50_Q5LBL8 Cluster: Putative glycosyltransferase protein; n=1;
           Bacteroides fragilis NCTC 9343|Rep: Putative
           glycosyltransferase protein - Bacteroides fragilis
           (strain ATCC 25285 / NCTC 9343)
          Length = 406

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 207 INYYYN-CSQKPKHWCWSGGMWRFY 278
           +++YYN  S++ +  CW+ G WRFY
Sbjct: 60  MHFYYNPVSEEVRKMCWNQGDWRFY 84


>UniRef50_A7PTV2 Cluster: Chromosome chr7 scaffold_31, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr7 scaffold_31, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 127

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 264 MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTR 386
           M  FYTDD             M+L FI  V +LH++GK  R
Sbjct: 80  MLLFYTDDDPGLKITPTVVLVMNLCFIGFVTVLHVFGKIYR 120


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 359,009,280
Number of Sequences: 1657284
Number of extensions: 5918596
Number of successful extensions: 12312
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12310
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)