Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0342.Seq
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    27   0.062
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    23   1.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   7.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   7.1  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    20   9.4  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 0.062
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -3

Query: 138 PRSYRGSTRRLRHFYSNVVKLYFKSD---IHLARL 43
           P+SY G+T  L+ FY  V K+  +S    IHL+ L
Sbjct: 57  PKSYFGTTTNLKRFYKVVEKILTQSSFECIHLSVL 91


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 138 PRSYRGSTRRLRHFY 94
           P+SY G+T  L+ FY
Sbjct: 57  PKSYFGTTTNLKRFY 71


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 199 DGLYYHWLFVGQQKL 155
           DG+  HW + G +K+
Sbjct: 291 DGMDIHWEYPGAEKM 305


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 123 GSTRRLRHFYSNVVKLYFKSDIH 55
           G  RRLR  Y+N   L  + + H
Sbjct: 2   GLPRRLRTAYTNTQLLELEKEFH 24


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 123 GSTRRLRHFYSNVVKLYFKSDIH 55
           G  RRLR  Y+N   L  + + H
Sbjct: 133 GLPRRLRTAYTNTQLLELEKEFH 155


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 106 QSPSATSVGSGSRSP 150
           QSPS+TS     RSP
Sbjct: 283 QSPSSTSSSPEPRSP 297


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,447
Number of Sequences: 336
Number of extensions: 1687
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)