Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0342.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0021 - 155700-156023                                             34   0.061
11_01_0023 - 162079-162402                                             34   0.061
01_05_0378 + 21628517-21628759                                         33   0.14 
12_01_0474 + 3718846-3719097                                           29   1.3  
11_06_0372 + 22781438-22781977                                         27   9.2  

>12_01_0021 - 155700-156023
          Length = 107

 Score = 33.9 bits (74), Expect = 0.061
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 264 MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 389
           M RFYTD++            MSL FI  V  LH++GK  R+
Sbjct: 58  MLRFYTDEAPGLRLSPTMVLVMSLCFIGFVTALHVFGKLYRS 99


>11_01_0023 - 162079-162402
          Length = 107

 Score = 33.9 bits (74), Expect = 0.061
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 264 MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 389
           M RFYTD++            MSL FI  V  LH++GK  R+
Sbjct: 58  MLRFYTDEAPGLRLSPTMVLVMSLCFIGFVTALHVFGKLYRS 99


>01_05_0378 + 21628517-21628759
          Length = 80

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 264 MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTR 386
           M +FYTD++            MS+ FIA V +LH++GK  R
Sbjct: 37  MLQFYTDEAAGRKMSPNSVLIMSIGFIAVVALLHVFGKLYR 77


>12_01_0474 + 3718846-3719097
          Length = 83

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 264 MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTR 386
           M +FYT+++            MS+ F A V +LH++GK  R
Sbjct: 39  MLQFYTEEAAGCKMSPNAVLIMSIGFFAVVALLHVFGKLYR 79


>11_06_0372 + 22781438-22781977
          Length = 179

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 115 SATSVGSGSRSPTKASAGPRTA 180
           S    GSGSRSP+KA+  P  A
Sbjct: 3   SGDEEGSGSRSPSKAAPAPAPA 24


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,738,507
Number of Sequences: 37544
Number of extensions: 166569
Number of successful extensions: 375
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)