Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0342.Seq
(449 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L25085-1|AAA19706.1| 96|Homo sapiens Sec61-complex beta-subuni... 68 2e-11
CR542159-1|CAG46956.1| 96|Homo sapiens SEC61B protein. 68 2e-11
CR456883-1|CAG33164.1| 96|Homo sapiens SEC61B protein. 68 2e-11
BC001734-1|AAH01734.1| 96|Homo sapiens Sec61 beta subunit prot... 68 2e-11
AL137067-2|CAC08000.1| 96|Homo sapiens Sec61 beta subunit prot... 68 2e-11
AK223384-1|BAD97104.1| 96|Homo sapiens protein translocation c... 64 2e-10
AF308287-1|AAG48255.1| 256|Homo sapiens serologically defined b... 29 9.7
>L25085-1|AAA19706.1| 96|Homo sapiens Sec61-complex beta-subunit
protein.
Length = 96
Score = 67.7 bits (158), Expect = 2e-11
Identities = 30/45 (66%), Positives = 33/45 (73%)
Frame = +3
Query: 255 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 389
+GGMWRFYT+DS MSLLFIASVFMLHIWGKYTR+
Sbjct: 52 TGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 109 SPSATSVGSGSRSPTKASAGPRTAS 183
+PS T+VGS RSP+KA A S
Sbjct: 5 TPSGTNVGSSGRSPSKAVAARAAGS 29
>CR542159-1|CAG46956.1| 96|Homo sapiens SEC61B protein.
Length = 96
Score = 67.7 bits (158), Expect = 2e-11
Identities = 30/45 (66%), Positives = 33/45 (73%)
Frame = +3
Query: 255 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 389
+GGMWRFYT+DS MSLLFIASVFMLHIWGKYTR+
Sbjct: 52 TGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 109 SPSATSVGSGSRSPTKASAGPRTAS 183
+PS T+VGS RSP+KA A S
Sbjct: 5 TPSGTNVGSSGRSPSKAVAARAAGS 29
>CR456883-1|CAG33164.1| 96|Homo sapiens SEC61B protein.
Length = 96
Score = 67.7 bits (158), Expect = 2e-11
Identities = 30/45 (66%), Positives = 33/45 (73%)
Frame = +3
Query: 255 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 389
+GGMWRFYT+DS MSLLFIASVFMLHIWGKYTR+
Sbjct: 52 TGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 109 SPSATSVGSGSRSPTKASAGPRTAS 183
+PS T+VGS RSP+KA A S
Sbjct: 5 TPSGTNVGSSGRSPSKAVAARAAGS 29
>BC001734-1|AAH01734.1| 96|Homo sapiens Sec61 beta subunit
protein.
Length = 96
Score = 67.7 bits (158), Expect = 2e-11
Identities = 30/45 (66%), Positives = 33/45 (73%)
Frame = +3
Query: 255 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 389
+GGMWRFYT+DS MSLLFIASVFMLHIWGKYTR+
Sbjct: 52 TGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 109 SPSATSVGSGSRSPTKASAGPRTAS 183
+PS T+VGS RSP+KA A S
Sbjct: 5 TPSGTNVGSSGRSPSKAVAARAAGS 29
>AL137067-2|CAC08000.1| 96|Homo sapiens Sec61 beta subunit
protein.
Length = 96
Score = 67.7 bits (158), Expect = 2e-11
Identities = 30/45 (66%), Positives = 33/45 (73%)
Frame = +3
Query: 255 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 389
+GGMWRFYT+DS MSLLFIASVFMLHIWGKYTR+
Sbjct: 52 TGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 109 SPSATSVGSGSRSPTKASAGPRTAS 183
+PS T+VGS RSP+KA A S
Sbjct: 5 TPSGTNVGSSGRSPSKAVAARAAGS 29
>AK223384-1|BAD97104.1| 96|Homo sapiens protein translocation
complex beta variant protein.
Length = 96
Score = 64.5 bits (150), Expect = 2e-10
Identities = 29/45 (64%), Positives = 32/45 (71%)
Frame = +3
Query: 255 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 389
+G MWRFYT+DS MSLLFIASVFMLHIWGKYTR+
Sbjct: 52 TGRMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 109 SPSATSVGSGSRSPTKASAGPRTAS 183
+PS T+VGS RSP+KA A S
Sbjct: 5 TPSGTNVGSSGRSPSKAVAARAAGS 29
>AF308287-1|AAG48255.1| 256|Homo sapiens serologically defined
breast cancer antigen NY-BR-20 protein.
Length = 256
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 121 TSVGSGSRSPTKASAGPRTAS 183
T GSGS PT +S GPR AS
Sbjct: 87 TERGSGSSKPTGSSGGPRMAS 107
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,907,313
Number of Sequences: 237096
Number of extensions: 968955
Number of successful extensions: 1540
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1540
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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