Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0342.Seq
(449 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY071155-1|AAL48777.1| 100|Drosophila melanogaster RE18615p pro... 67 9e-12
AJ249754-1|CAB56698.1| 100|Drosophila melanogaster sec61beta pr... 67 9e-12
AE013599-1924|AAF58229.1| 100|Drosophila melanogaster CG10130-P... 67 9e-12
AY118698-1|AAM50558.1| 570|Drosophila melanogaster AT19257p pro... 29 3.8
AE014296-2960|AAN11700.1| 573|Drosophila melanogaster CG32181-P... 29 3.8
AY094906-1|AAM11259.1| 383|Drosophila melanogaster RH12404p pro... 28 6.7
AY070561-1|AAL48032.1| 538|Drosophila melanogaster LD37523p pro... 28 6.7
AE014298-1745|AAF48135.2| 383|Drosophila melanogaster CG1488-PA... 28 6.7
AE014298-1744|AAN09641.1| 483|Drosophila melanogaster CG1488-PB... 28 6.7
AE014297-149|AAF52095.1| 538|Drosophila melanogaster CG2503-PA ... 28 6.7
>AY071155-1|AAL48777.1| 100|Drosophila melanogaster RE18615p
protein.
Length = 100
Score = 67.3 bits (157), Expect = 9e-12
Identities = 30/45 (66%), Positives = 32/45 (71%)
Frame = +3
Query: 255 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 389
+GGMWRFYTDDS MSLLFIASVFMLHIWGKY R+
Sbjct: 56 TGGMWRFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNRS 100
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +1
Query: 100 MPQSPSATSVGSGSRSPTKASAGPRTA 180
MP S+TSVGSGSRSP+K SA PR+A
Sbjct: 1 MPAPASSTSVGSGSRSPSKLSA-PRSA 26
>AJ249754-1|CAB56698.1| 100|Drosophila melanogaster sec61beta
protein protein.
Length = 100
Score = 67.3 bits (157), Expect = 9e-12
Identities = 30/45 (66%), Positives = 32/45 (71%)
Frame = +3
Query: 255 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 389
+GGMWRFYTDDS MSLLFIASVFMLHIWGKY R+
Sbjct: 56 TGGMWRFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNRS 100
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +1
Query: 100 MPQSPSATSVGSGSRSPTKASAGPRTA 180
MP S+TSVGSGSRSP+K SA PR+A
Sbjct: 1 MPAPASSTSVGSGSRSPSKLSA-PRSA 26
>AE013599-1924|AAF58229.1| 100|Drosophila melanogaster CG10130-PA
protein.
Length = 100
Score = 67.3 bits (157), Expect = 9e-12
Identities = 30/45 (66%), Positives = 32/45 (71%)
Frame = +3
Query: 255 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 389
+GGMWRFYTDDS MSLLFIASVFMLHIWGKY R+
Sbjct: 56 TGGMWRFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNRS 100
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +1
Query: 100 MPQSPSATSVGSGSRSPTKASAGPRTA 180
MP S+TSVGSGSRSP+K SA PR+A
Sbjct: 1 MPAPASSTSVGSGSRSPSKLSA-PRSA 26
>AY118698-1|AAM50558.1| 570|Drosophila melanogaster AT19257p
protein.
Length = 570
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 103 PQSPSATSVGSGSRSPTKASAGPRTASG 186
PQ+P V SG+R PT S+ TA+G
Sbjct: 109 PQTPCELKVPSGNRCPTDQSSNHDTATG 136
>AE014296-2960|AAN11700.1| 573|Drosophila melanogaster CG32181-PA
protein.
Length = 573
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 103 PQSPSATSVGSGSRSPTKASAGPRTASG 186
PQ+P V SG+R PT S+ TA+G
Sbjct: 109 PQTPCELKVPSGNRCPTDQSSNHDTATG 136
>AY094906-1|AAM11259.1| 383|Drosophila melanogaster RH12404p
protein.
Length = 383
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -2
Query: 181 WLFVGQQKLLWVIYSQILQR*HSEIEAFLFKRCKTLL 71
W+F Q+ LW + LQ HS++E+ + KR K LL
Sbjct: 118 WIF--QRTQLWRDLDEQLQVIHSQMESVIEKRAKELL 152
>AY070561-1|AAL48032.1| 538|Drosophila melanogaster LD37523p
protein.
Length = 538
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 106 QSPSATSVGSGSRSPTKASAGPRTASG 186
+S S + GSGSRSP+++ +G + SG
Sbjct: 503 RSRSGSRSGSGSRSPSRSRSGSPSGSG 529
>AE014298-1745|AAF48135.2| 383|Drosophila melanogaster CG1488-PA,
isoform A protein.
Length = 383
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -2
Query: 181 WLFVGQQKLLWVIYSQILQR*HSEIEAFLFKRCKTLL 71
W+F Q+ LW + LQ HS++E+ + KR K LL
Sbjct: 118 WIF--QRTQLWRDLDEQLQVIHSQMESVIEKRAKELL 152
>AE014298-1744|AAN09641.1| 483|Drosophila melanogaster CG1488-PB,
isoform B protein.
Length = 483
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -2
Query: 181 WLFVGQQKLLWVIYSQILQR*HSEIEAFLFKRCKTLL 71
W+F Q+ LW + LQ HS++E+ + KR K LL
Sbjct: 218 WIF--QRTQLWRDLDEQLQVIHSQMESVIEKRAKELL 252
>AE014297-149|AAF52095.1| 538|Drosophila melanogaster CG2503-PA
protein.
Length = 538
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 106 QSPSATSVGSGSRSPTKASAGPRTASG 186
+S S + GSGSRSP+++ +G + SG
Sbjct: 503 RSRSGSRSGSGSRSPSRSRSGSPSGSG 529
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,451,746
Number of Sequences: 53049
Number of extensions: 288357
Number of successful extensions: 681
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1455824790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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