Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0342.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025715-6|AAK68450.1|   81|Caenorhabditis elegans Hypothetical ...    62   2e-10
Z81104-1|CAB70255.1|  329|Caenorhabditis elegans Hypothetical pr...    28   3.6  

>AC025715-6|AAK68450.1|   81|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.9 protein.
          Length = 81

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 26/45 (57%), Positives = 33/45 (73%)
 Frame = +3

Query: 255 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 389
           +GG+WRFYT+DS            MSL+FIASVF+LHIWGK+TR+
Sbjct: 35  NGGLWRFYTEDSTGLKIGPVPVLVMSLVFIASVFVLHIWGKFTRS 79


>Z81104-1|CAB70255.1|  329|Caenorhabditis elegans Hypothetical
           protein M199.1 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 216 YYNCSQKPKHWCWSGGMWR 272
           +YNCS KP+   WS G+ R
Sbjct: 15  FYNCSWKPQSEWWSNGVQR 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,422,216
Number of Sequences: 27780
Number of extensions: 146930
Number of successful extensions: 235
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)