Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0342.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60460.1 68418.m07583 sec61beta family protein similar to SP|...    36   0.013
At2g45070.1 68415.m05610 sec61beta family protein similar to SP|...    35   0.022
At3g60540.2 68416.m06772 sec61beta family protein similar to SP|...    34   0.039
At3g60540.1 68416.m06771 sec61beta family protein similar to SP|...    34   0.039
At2g07751.1 68415.m00901 NADH-ubiquinone oxidoreductase chain 3,...    27   7.7  

>At5g60460.1 68418.m07583 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 109

 Score = 35.9 bits (79), Expect = 0.013
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +3

Query: 255 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 377
           S  M RFYTDD+            MSL FI  V  LH++GK
Sbjct: 59  SSNMLRFYTDDAPGLKISPTVVLIMSLCFIGFVTALHVFGK 99


>At2g45070.1 68415.m05610 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 82

 Score = 35.1 bits (77), Expect = 0.022
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 255 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 377
           +G M +FYTDD+            MS+ FIA V +LH+ GK
Sbjct: 37  AGSMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 77


>At3g60540.2 68416.m06772 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 81

 Score = 34.3 bits (75), Expect = 0.039
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 255 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 377
           +G M +FYTDD+            MS+ FIA V +LH+ GK
Sbjct: 34  AGTMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 74


>At3g60540.1 68416.m06771 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 81

 Score = 34.3 bits (75), Expect = 0.039
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 255 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 377
           +G M +FYTDD+            MS+ FIA V +LH+ GK
Sbjct: 34  AGTMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 74


>At2g07751.1 68415.m00901 NADH-ubiquinone oxidoreductase chain 3,
           putative identical to NADH-ubiquinone oxidoreductase
           chain 3 SP:P48908 from [Raphanus sativus]; contains Pfam
           profile: PF00507 NADH-ubiquinone/plastoquinone
           oxidoreductase,chain 3
          Length = 118

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 265 IPPDQHQCFGFWLQL***LIFVDGLYYHW 179
           +PP++   FGFW  +    I   G  Y W
Sbjct: 82  VPPNKIDLFGFWSMMAFLFILTIGFLYEW 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,857,650
Number of Sequences: 28952
Number of extensions: 135041
Number of successful extensions: 262
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)