Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0340.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0031 + 292335-292844                                             31   0.68 
01_06_1550 + 38191957-38192054,38193084-38193284,38193456-381940...    30   1.2  
05_04_0286 + 19833114-19834053,19834149-19834165                       28   3.6  
11_06_0111 - 20217128-20217198,20217648-20217770,20217924-202186...    27   6.3  
06_03_1363 - 29576265-29577575                                         27   6.3  
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311...    27   6.3  
11_06_0334 + 22437187-22437322,22437430-22437515,22437927-224380...    27   8.4  
01_05_0494 + 22701994-22703117,22703526-22703580                       27   8.4  

>03_01_0031 + 292335-292844
          Length = 169

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 467 GXRVSISXDIEFAAARXPKRRWSKWGRWK 381
           G R++   +     AR   RRWS+W RW+
Sbjct: 15  GWRLTAGVETAMVGARGCGRRWSEWRRWR 43


>01_06_1550 +
           38191957-38192054,38193084-38193284,38193456-38194090,
           38194398-38195419
          Length = 651

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 378 QFPSAPFAPPSLWXPSGREFDIXAYRYPXTSRGG 479
           + PS P  P  ++ P G  FD+ A + P T  GG
Sbjct: 194 EIPSCPSLPDPIF-PRGTHFDVVAVKLPCTRAGG 226


>05_04_0286 + 19833114-19834053,19834149-19834165
          Length = 318

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 284 GCRTTAGSCYGRTAASCRCCGCSWAAFLAV 373
           G R  +G+ YG  AA   CC  SW A  AV
Sbjct: 179 GGRRPSGAAYG-AAAPPECCAVSWDAIRAV 207


>11_06_0111 -
           20217128-20217198,20217648-20217770,20217924-20218637,
           20218874-20218915,20219025-20219820
          Length = 581

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
 Frame = +2

Query: 155 TRFVRATSTYII**NKQNGVLYFFRFYHLKNQTCSVLS-TACRRGCRTTAGSCYGRTAAS 331
           T + ++   Y    NK  GV        + N+TC      A    C+ T  SC  R + S
Sbjct: 186 TSYAKSMELYSKYRNKGTGVPLVLDLV-VGNETCDEAKRNALSYACKATNSSCIDRPSRS 244

Query: 332 CRCCGCS 352
              C CS
Sbjct: 245 GYLCNCS 251


>06_03_1363 - 29576265-29577575
          Length = 436

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 366 WQLLQFPSAPFAPPSLWXPS 425
           W  L  P  P  PP LW PS
Sbjct: 136 WDALPSPPMPSPPPMLWHPS 155


>04_03_0181 -
           12327281-12328620,12330922-12331015,12331079-12331183,
           12331404-12332592,12333268-12333461
          Length = 973

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +2

Query: 275 CRRGCRTTAGSCYGRTAASCRCCGCSWAAFLAVAAISICPI 397
           C R C    GSC  +  A    C C +A    + AI  C +
Sbjct: 13  CVRACVRAGGSCRRQWRADSSSCCCCFAYMRFLMAIVACAL 53


>11_06_0334 +
           22437187-22437322,22437430-22437515,22437927-22438073,
           22438166-22438274,22439510-22439633,22439727-22439752,
           22439774-22440000,22440084-22440185
          Length = 318

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 269 TACRRGCRTTAGSCYG 316
           T C  GC TTAG C G
Sbjct: 212 TTCFEGCATTAGECGG 227


>01_05_0494 + 22701994-22703117,22703526-22703580
          Length = 392

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 402 PPSLWXPSGREFDIXAYRYPXTSRGGPVPNS 494
           PP +  PSG++F + A R+   S   P P+S
Sbjct: 129 PPGIVSPSGKQFPLVA-RFATLSASPPTPSS 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,514,958
Number of Sequences: 37544
Number of extensions: 195035
Number of successful extensions: 548
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)