Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0340.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22017| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)                 30   0.92 
SB_50933| Best HMM Match : Laminin_EGF (HMM E-Value=0.0069)            29   1.6  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      28   4.9  
SB_50633| Best HMM Match : ShTK (HMM E-Value=0.78)                     28   4.9  
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               27   6.5  
SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08)                 27   6.5  
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)                 27   6.5  
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  

>SB_22017| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)
          Length = 338

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 209 RFAYFIKLYTSMLHEQI*FKFSTMSFNFSLCFYI*LNKAI*TVYTCNVNY-PCFCFNSVF 33
           R A+  +L ++ LHE++ +K   +S    L FY+  +     V  C +N  P  C N  F
Sbjct: 242 RRAWMRRLTSNSLHERVNYKVFKISLAIVLAFYLCYSCYWLQVTLCTLNEPPRLCANQTF 301

Query: 32  YF 27
            F
Sbjct: 302 RF 303


>SB_50933| Best HMM Match : Laminin_EGF (HMM E-Value=0.0069)
          Length = 233

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = +2

Query: 230 FYHLKNQTCSVLSTACRRGCRTTAGSCYGRTAASCRCCGCSW 355
           +Y  K     +   AC   C    G C+G TA  C  C   W
Sbjct: 53  YYEDKGDDGKMSCKACHESC---FGGCHGGTAKDCSACKSGW 91


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +2

Query: 251 TCSVLSTACRRGCRTTAGSCYGRTAASCRCCGCSWAAFLAVAAISICPICST 406
           +C V+  +CR  C +    CY    A C C    ++  +A  +  +   CS+
Sbjct: 222 SCRVVCYSCRVACCSCRVVCYSCRVACCSCRVVCYSCRVACCSCRVHMKCSS 273



 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = +2

Query: 251 TCSVLSTACRRGCRTTAGSCYGRTAA--SCR--CCGC 349
           +C V+  +CR  C +    CY    A  SCR  CC C
Sbjct: 138 SCRVVFCSCRVACCSCRVVCYSCRVACCSCRVACCSC 174


>SB_50633| Best HMM Match : ShTK (HMM E-Value=0.78)
          Length = 93

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +2

Query: 233 YHL-KNQTCSVLSTACRRGCRTTAGSCYGRTAASCRCCGCSW 355
           YHL K QTC+      R  C  T G C G    +    GC W
Sbjct: 40  YHLSKTQTCAF--PFARDFCNKTCGICEGLIKCNDTPYGCCW 79


>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/48 (22%), Positives = 21/48 (43%)
 Frame = +2

Query: 341 CGCSWAAFLAVAAISICPICSTFSLXT*RPRIRYQXLSIPVDLXGGPG 484
           CG  +      + +  CP+C TF     R  +++   ++  +  G PG
Sbjct: 421 CGHVYCCQTCASNLYYCPLCKTFITFVQRIHVQFPCETLEEESFGNPG 468


>SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08)
          Length = 473

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 248 QTCSVLSTACRRGCRTTAGSCYGRTAASCR 337
           Q+C +L + C  GC+   G+ +    + C+
Sbjct: 193 QSCPLLESVCLNGCKLVYGTTFSEFLSCCK 222


>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
          Length = 506

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 233 YHLKNQTCSVLSTACRRGCRTTAGSCYGRTAASCRCCGCSWAAFLAVAAISI 388
           +HL ++T +    AC  G    +G C  R      CC    A  + VAA+++
Sbjct: 206 FHL-SETIACNRNACENGGTPISGRCKCRAGYEGTCCEKGKAFSMRVAALAV 256


>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +2

Query: 251 TCSVLSTACRRGCRTTAGSCYGRTAASCRCCG 346
           TC      C +GCRT+   C G     C  CG
Sbjct: 249 TCGKGWGTCGKGCRTSGKGC-GTCGKGCGTCG 279


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,183,813
Number of Sequences: 59808
Number of extensions: 225435
Number of successful extensions: 758
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)