Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0340.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z81055-4|CAB02893.1|  824|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U41625-3|AAA83326.1|  264|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U21324-12|AAA62559.1|  227|Caenorhabditis elegans Hypothetical p...    27   7.6  
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g...    27   7.6  
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ...    27   7.6  
AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter o...    27   7.6  
AF003386-6|AAK82897.1|  527|Caenorhabditis elegans Hypothetical ...    27   10.0 
AF003386-5|AAK82898.1|  529|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical
           protein T01B7.8 protein.
          Length = 164

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +2

Query: 254 CSVLSTACRRGCRTTAGSCYGRTAASCRCCGC 349
           C+   T C   C T    C       C CCGC
Sbjct: 99  CTCCRTCCCTRCCTCCRPCCCGCGCGCGCCGC 130



 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = +2

Query: 275 CRRGCRTTAGSCYGRTAASCR--CCGC 349
           CRR C      C  R    CR  CCGC
Sbjct: 95  CRRCCTCCRTCCCTRCCTCCRPCCCGC 121



 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
 Frame = +2

Query: 254 CSVLSTACRRGCRTTAGSCYGRTAASCRC-CGC 349
           C    T CR  C T   +C       C C CGC
Sbjct: 95  CRRCCTCCRTCCCTRCCTCCRPCCCGCGCGCGC 127


>Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical
           protein C06A1.7 protein.
          Length = 149

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +2

Query: 254 CSVLSTACRRGCRTTAGSCYGRTAASCRCCGC 349
           C+   T C   C T    C       C CCGC
Sbjct: 85  CTCCRTCCCTRCCTCCRPCCCGCGCGCGCCGC 116


>Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical
           protein C06A1.6 protein.
          Length = 152

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +2

Query: 254 CSVLSTACRRGCRTTAGSCYGRTAASCRCCGC 349
           C+   T C   C T    C       C CCGC
Sbjct: 88  CTCCRTCCCTRCCTCCRPCCCGCGCGCGCCGC 119


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +2

Query: 254 CSVLSTACRRGCRTTAGSCYGRTAASCRCCGC 349
           C+   T C   C T    C       C CCGC
Sbjct: 100 CTCCRTCCCTRCCTCCRPCCCGCGCGCGCCGC 131



 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = +2

Query: 275 CRRGCRTTAGSCYGRTAASCR--CCGC 349
           CRR C      C  R    CR  CCGC
Sbjct: 96  CRRCCTCCRTCCCTRCCTCCRPCCCGC 122



 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
 Frame = +2

Query: 254 CSVLSTACRRGCRTTAGSCYGRTAASCRC-CGC 349
           C    T CR  C T   +C       C C CGC
Sbjct: 96  CRRCCTCCRTCCCTRCCTCCRPCCCGCGCGCGC 128


>U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical
           protein C04G6.10 protein.
          Length = 166

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +2

Query: 254 CSVLSTACRRGCRTTAGSCYGRTAASCRCCGC 349
           C+   T C   C T    C       C CCGC
Sbjct: 100 CTCCRTCCCTRCCTCCRPCCCGCGCGCGCCGC 131



 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = +2

Query: 275 CRRGCRTTAGSCYGRTAASCR--CCGC 349
           CRR C      C  R    CR  CCGC
Sbjct: 96  CRRCCTCCRTCCCTRCCTCCRPCCCGC 122



 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
 Frame = +2

Query: 254 CSVLSTACRRGCRTTAGSCYGRTAASCRC-CGC 349
           C    T CR  C T   +C       C C CGC
Sbjct: 96  CRRCCTCCRTCCCTRCCTCCRPCCCGCGCGCGC 128


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = +2

Query: 275 CRRGCRTTAGSCYGRTAASCR--CCGC 349
           CRR C      C  R    CR  CCGC
Sbjct: 97  CRRCCTCCRTCCCTRCCTCCRPCCCGC 123



 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
 Frame = +2

Query: 254 CSVLSTACRRGCRTTAGSCYGRTAASCRC-CGC 349
           C    T CR  C T   +C       C C CGC
Sbjct: 97  CRRCCTCCRTCCCTRCCTCCRPCCCGCGCGCGC 129


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = +2

Query: 275 CRRGCRTTAGSCYGRTAASCR--CCGC 349
           CRR C      C  R    CR  CCGC
Sbjct: 97  CRRCCTCCRTCCCTRCCTCCRPCCCGC 123


>Z81055-4|CAB02893.1|  824|Caenorhabditis elegans Hypothetical
           protein F01G10.5 protein.
          Length = 824

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = +1

Query: 37  TELKQKHG*LTLQVYTVQMALFNQI*KHREKLNDIVLNLN*ICSCNIDVYNLMK 198
           +EL +K   LT+QV  +Q A  N++   R+K  +++  L    + N+D+  L+K
Sbjct: 324 SELNEK---LTMQVKDLQDASENELASFRQKEKELIDELRMATNENVDLEELLK 374


>U41625-3|AAA83326.1|  264|Caenorhabditis elegans Hypothetical
           protein K03A1.4a protein.
          Length = 264

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 197 NKQNGVLYFFRFYHLKNQTCSV 262
           N QNGV+ F  F HL N T S+
Sbjct: 175 NDQNGVITFDEFAHLMNGTASM 196


>U21324-12|AAA62559.1|  227|Caenorhabditis elegans Hypothetical
           protein C35D10.3 protein.
          Length = 227

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 407 RWSKWGRWKLQQLPKR 360
           RW K+  WKLQQL +R
Sbjct: 71  RWLKFTEWKLQQLAER 86


>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
            protein.
          Length = 1492

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +3

Query: 384  PSAPF-APPSLWXPSGREFDIX-AYRYPXTSRGGPVPNSP 497
            P A + A P    P G +F+   A   P TS G P P  P
Sbjct: 1114 PQASYGAAPGAQGPPGGQFEAHGAAALPPTSHGAPTPQGP 1153


>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
            protein Y53H1C.2a protein.
          Length = 1512

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +3

Query: 384  PSAPF-APPSLWXPSGREFDIX-AYRYPXTSRGGPVPNSP 497
            P A + A P    P G +F+   A   P TS G P P  P
Sbjct: 1134 PQASYGAAPGAQGPPGGQFEAHGAAALPPTSHGAPTPQGP 1173


>AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter of
           sr proteins protein1 protein.
          Length = 949

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 218 YFFRFYHLKNQTCSVLSTACRRGCRTTA 301
           +FF  + LKN T   +   C RGC + A
Sbjct: 6   FFFGNFGLKNPTICAIEHICHRGCGSYA 33


>AF003386-6|AAK82897.1|  527|Caenorhabditis elegans Hypothetical
           protein F59E12.4a protein.
          Length = 527

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 445 LISNSRPLGXQREGGANGADGNCSNC 368
           +I N  P      GG+ GA  NC +C
Sbjct: 482 VIPNGDPFSGSSSGGSGGAVWNCGHC 507


>AF003386-5|AAK82898.1|  529|Caenorhabditis elegans Hypothetical
           protein F59E12.4b protein.
          Length = 529

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 445 LISNSRPLGXQREGGANGADGNCSNC 368
           +I N  P      GG+ GA  NC +C
Sbjct: 484 VIPNGDPFSGSSSGGSGGAVWNCGHC 509


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,007,341
Number of Sequences: 27780
Number of extensions: 177535
Number of successful extensions: 538
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)