Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0340.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   0.77 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.4  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = -1

Query: 238 VIKSKKIQYTVLLISLNYIRRCCTNKSSLN 149
           +++++ I Y + ++ LN+ ++  T  SS+N
Sbjct: 205 LVETEPIYYNLTMVKLNWPKKRVTKMSSIN 234


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 124  PYAFIFD*TKPFERYTL 74
            PYA + D  KP  RYT+
Sbjct: 964  PYAALIDELKPATRYTI 980


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 124  PYAFIFD*TKPFERYTL 74
            PYA + D  KP  RYT+
Sbjct: 960  PYAALIDELKPATRYTI 976


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 447  AYRYPXTSRGGPVPNSP 497
            +YR P  S G PVP  P
Sbjct: 1353 SYRGPSASGGRPVPERP 1369


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 363 FWQLLQFPSAP 395
           +W +L FPSAP
Sbjct: 339 YWGILGFPSAP 349


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 363 FWQLLQFPSAP 395
           +W +L FPSAP
Sbjct: 339 YWGILGFPSAP 349


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 15  FFYWKVKYRIKTKTRVVN 68
           FFYW++     + T+ +N
Sbjct: 265 FFYWRIYNAAVSTTKAIN 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,762
Number of Sequences: 438
Number of extensions: 2160
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)