Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0340.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g14240.2 68414.m01686 nucleoside phosphatase family protein /... 28 4.0
At1g14240.1 68414.m01685 nucleoside phosphatase family protein /... 28 4.0
At2g02970.1 68415.m00249 nucleoside phosphatase family protein /... 27 5.3
At4g32970.1 68417.m04690 expressed protein low similarity to SP|... 27 7.0
At3g60500.2 68416.m06767 3' exoribonuclease family protein simil... 27 7.0
At3g60500.1 68416.m06766 3' exoribonuclease family protein simil... 27 7.0
At3g03870.2 68416.m00400 expressed protein predicted using genef... 27 7.0
At1g14250.1 68414.m01687 nucleoside phosphatase family protein /... 27 7.0
>At1g14240.2 68414.m01686 nucleoside phosphatase family protein /
GDA1/CD39 family protein low similarity to nod factor
binding lectin-nucleotide phosphohydrolase [Dolichos
biflorus] GI:4868375; contains Pfam profile PF01150:
GDA1/CD39 (nucleoside phosphatase) family
Length = 479
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 497 GRIGYRAPPXGXRVSISXDIEFAAARXPKRRWSK 396
G Y P G VS++ +EFA R PKR + +
Sbjct: 112 GLSSYADNPEGASVSVTKLVEFAKQRIPKRMFRR 145
>At1g14240.1 68414.m01685 nucleoside phosphatase family protein /
GDA1/CD39 family protein low similarity to nod factor
binding lectin-nucleotide phosphohydrolase [Dolichos
biflorus] GI:4868375; contains Pfam profile PF01150:
GDA1/CD39 (nucleoside phosphatase) family
Length = 483
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 497 GRIGYRAPPXGXRVSISXDIEFAAARXPKRRWSK 396
G Y P G VS++ +EFA R PKR + +
Sbjct: 112 GLSSYADNPEGASVSVTKLVEFAKQRIPKRMFRR 145
>At2g02970.1 68415.m00249 nucleoside phosphatase family protein /
GDA1/CD39 family protein low similarity to SP|P55772
Ectonucleoside triphosphate diphosphohydrolase 1 (EC
3.6.1.5) (Ecto-apyrase) {Mus musculus}; contains Pfam
profile PF01150: GDA1/CD39 (nucleoside phosphatase)
family
Length = 555
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 497 GRIGYRAPPXGXRVSISXDIEFAAARXPKRRW 402
G + P G VS++ +EFA R PK W
Sbjct: 129 GLSAFADDPDGASVSLTELVEFAKGRVPKGMW 160
>At4g32970.1 68417.m04690 expressed protein low similarity to
SP|Q13061 Triadin {Homo sapiens}
Length = 750
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 272 QCLALNKFDFLSDKI*KNTVHRFAY 198
+CL L F+ DK+ +N+ HRFA+
Sbjct: 52 ECLKLAITRFIHDKLSRNSDHRFAF 76
>At3g60500.2 68416.m06767 3' exoribonuclease family protein similar
to SP|Q06265 Exosome complex exonuclease RRP45 [Homo
sapiens]; contains Pfam profiles PF01138: 3'
exoribonuclease family, domain 1, PF03725: 3'
exoribonuclease family, domain 2
Length = 438
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 405 PSLWXPSGREFDIXAYRYPXTSRGGPVPNS 494
PS W P D+ + + SRG PV S
Sbjct: 353 PSNWDPYSEAMDVDSLKVSLASRGDPVTKS 382
>At3g60500.1 68416.m06766 3' exoribonuclease family protein similar
to SP|Q06265 Exosome complex exonuclease RRP45 [Homo
sapiens]; contains Pfam profiles PF01138: 3'
exoribonuclease family, domain 1, PF03725: 3'
exoribonuclease family, domain 2
Length = 438
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 405 PSLWXPSGREFDIXAYRYPXTSRGGPVPNS 494
PS W P D+ + + SRG PV S
Sbjct: 353 PSNWDPYSEAMDVDSLKVSLASRGDPVTKS 382
>At3g03870.2 68416.m00400 expressed protein predicted using
genefinder
Length = 266
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 4 TATHFFIGK*NTEL-KQKHG*LTLQVYTVQMALFNQI*KHREKLNDIVLNL 153
T FF+G N ++ K K+ L Q+Y+ ++ H KLN+ + +
Sbjct: 197 TVCVFFLGHNNIKICKNKNQMLRFQIYSDDNKRMKEVVNHATKLNEAIFGM 247
>At1g14250.1 68414.m01687 nucleoside phosphatase family protein /
GDA1/CD39 family protein low similarity to SP|P97687
Ectonucleoside triphosphate diphosphohydrolase 1 (EC
3.6.1.5) (Ecto-apyrase) {Rattus norvegicus}; contains
Pfam profile PF01150: GDA1/CD39 (nucleoside phosphatase)
family
Length = 488
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 497 GRIGYRAPPXGXRVSISXDIEFAAARXPKRRWSK 396
G Y P G VS++ +EFA R PK + K
Sbjct: 113 GLSSYADNPEGASVSVTKLVEFAKGRIPKGKLKK 146
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,155,448
Number of Sequences: 28952
Number of extensions: 154096
Number of successful extensions: 402
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -