Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0339.Seq
         (419 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825...    27   6.1  
01_03_0281 - 14570635-14574633                                         27   8.1  

>08_02_0516 +
           18080706-18080760,18081796-18081885,18082479-18082573,
           18083658-18083726,18083812-18084393
          Length = 296

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 415 PPQARPGQAQPLQAVXLPRAVQVHRTLPP 329
           PPQ +P Q Q LQ   LP+ +Q    LPP
Sbjct: 214 PPQLQP-QPQLLQQPQLPQQLQPQSQLPP 241


>01_03_0281 - 14570635-14574633
          Length = 1332

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 18  LSRQHNYIFFLPGTKPGLFMYAD 86
           ++  HNYI FLP T   LF+ +D
Sbjct: 508 IAEGHNYIEFLPNTVRHLFLCSD 530


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,849,121
Number of Sequences: 37544
Number of extensions: 178229
Number of successful extensions: 279
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)