Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0339.Seq
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine r...    28   2.4  
AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine re...    28   3.1  
Z92812-3|CAB07282.2|  342|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U80028-2|AAN73869.1|  351|Caenorhabditis elegans Serpentine rece...    26   9.5  

>AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine
           receptor, class h protein247 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 10  YVYYLGNTITFFFFPVQNRGFLCMLIKVKQR 102
           ++  + N ITFF  PV   G  C+L K  +R
Sbjct: 15  FLISISNVITFFEIPVCTFGAYCILFKTPER 45


>AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine
           receptor, class x protein9 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -1

Query: 263 GKIAFASKTYSIFLTISVRISVFNTTKHDLEYSL*CLRF*ILLND 129
           G + F+S  +SIF ++S+ ISVF       + S+  + F  +++D
Sbjct: 8   GVVLFSSSIFSIFSSVSIFISVFKLAFISRKSSIYVIAFFNIISD 52


>Z92812-3|CAB07282.2|  342|Caenorhabditis elegans Hypothetical
           protein T03E6.3 protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 178 TWSIPCSV*DFKSYLMTSNDFND 110
           TW+I C+V ++K + +T N+ N+
Sbjct: 99  TWNIHCAVFNWKQFEVTRNEVNN 121


>U80028-2|AAN73869.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein88 protein.
          Length = 351

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 13  VYYLGNTITFFFFPVQNRGFLCMLIK-VKQRESYR 114
           V Y  + +T F FPV   G  C+L K  K+  SYR
Sbjct: 28  VSYTSHFLTAFSFPVYLFGGYCILYKSPKEMSSYR 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,878,495
Number of Sequences: 27780
Number of extensions: 169814
Number of successful extensions: 284
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)