Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0338.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    58   1e-09
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    58   1e-09
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    58   1e-09
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   6.3  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   8.4  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 23/40 (57%), Positives = 31/40 (77%)
 Frame = -1

Query: 475 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 356
           +GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ PLG
Sbjct: 381 SGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLG 420



 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 23/33 (69%), Positives = 23/33 (69%)
 Frame = -3

Query: 362 PRVXFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
           P   FAVRDMRQTVAVGVIKAV     G  KVT
Sbjct: 418 PLGRFAVRDMRQTVAVGVIKAVEKVAPGAAKVT 450


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 23/40 (57%), Positives = 31/40 (77%)
 Frame = -1

Query: 475 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 356
           +GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ PLG
Sbjct: 381 SGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLG 420



 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 23/33 (69%), Positives = 23/33 (69%)
 Frame = -3

Query: 362 PRVXFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
           P   FAVRDMRQTVAVGVIKAV     G  KVT
Sbjct: 418 PLGRFAVRDMRQTVAVGVIKAVEKVAPGAAKVT 450


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 23/40 (57%), Positives = 31/40 (77%)
 Frame = -1

Query: 475 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 356
           +GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ PLG
Sbjct: 381 SGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLG 420



 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 23/33 (69%), Positives = 23/33 (69%)
 Frame = -3

Query: 362 PRVXFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
           P   FAVRDMRQTVAVGVIKAV     G  KVT
Sbjct: 418 PLGRFAVRDMRQTVAVGVIKAVEKVAPGAAKVT 450


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -1

Query: 172 GVSKEKRATNSFLFYIFYKACNVTLFYNLYKV 77
           G S E     S+   IFY       FYNL KV
Sbjct: 762 GASSEMECYFSYCSLIFYYQATTLQFYNLPKV 793


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 238 QEVARAVNSTIFHTTAILHSPKGVSKEKRATNSFL 134
           + +A A+N +I  TT +    K +  E+ ++ SFL
Sbjct: 369 EALAYAINPSILPTTLLTSYQKSIQDEENSSVSFL 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,368
Number of Sequences: 5004
Number of extensions: 34397
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)