Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0338.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0548 + 4099386-4099847,4100435-4101316                           55   3e-08
03_01_0547 + 4093196-4093657,4094267-4095148                           55   3e-08
03_01_0544 + 4082528-4082989,4083585-4084466                           55   3e-08
03_01_0543 + 4076981-4077442,4078145-4079026                           55   3e-08
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623...    34   0.073
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299...    31   0.51 
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903     29   2.7  

>03_01_0548 + 4099386-4099847,4100435-4101316
          Length = 447

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 21/40 (52%), Positives = 31/40 (77%)
 Frame = -1

Query: 475 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 356
           +GK  E  PK +K+GDA +V ++P+KP+ VE+F E+PPLG
Sbjct: 371 SGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLG 410



 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 23/33 (69%), Positives = 24/33 (72%)
 Frame = -3

Query: 362 PRVXFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
           P   FAVRDMRQTVAVGVIK V  K+  G KVT
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVT 440


>03_01_0547 + 4093196-4093657,4094267-4095148
          Length = 447

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 21/40 (52%), Positives = 31/40 (77%)
 Frame = -1

Query: 475 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 356
           +GK  E  PK +K+GDA +V ++P+KP+ VE+F E+PPLG
Sbjct: 371 SGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLG 410



 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 23/33 (69%), Positives = 24/33 (72%)
 Frame = -3

Query: 362 PRVXFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
           P   FAVRDMRQTVAVGVIK V  K+  G KVT
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVT 440


>03_01_0544 + 4082528-4082989,4083585-4084466
          Length = 447

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 21/40 (52%), Positives = 31/40 (77%)
 Frame = -1

Query: 475 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 356
           +GK  E  PK +K+GDA +V ++P+KP+ VE+F E+PPLG
Sbjct: 371 SGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLG 410



 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 23/33 (69%), Positives = 24/33 (72%)
 Frame = -3

Query: 362 PRVXFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
           P   FAVRDMRQTVAVGVIK V  K+  G KVT
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVT 440


>03_01_0543 + 4076981-4077442,4078145-4079026
          Length = 447

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 21/40 (52%), Positives = 31/40 (77%)
 Frame = -1

Query: 475 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 356
           +GK  E  PK +K+GDA +V ++P+KP+ VE+F E+PPLG
Sbjct: 371 SGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLG 410



 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 23/33 (69%), Positives = 24/33 (72%)
 Frame = -3

Query: 362 PRVXFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
           P   FAVRDMRQTVAVGVIK V  K+  G KVT
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVT 440


>04_04_1593 -
           34661670-34661798,34661882-34661989,34662129-34662368,
           34662614-34662782,34662872-34663362,34663681-34663991,
           34664396-34664473,34665034-34665228,34665363-34665524,
           34665759-34665840
          Length = 654

 Score = 33.9 bits (74), Expect = 0.073
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 475 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGSVLL 344
           TGK+++  P+ + S   A++ +   K +CVE F     LG V L
Sbjct: 592 TGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFL 635


>04_03_0107 +
           11328267-11328276,11329059-11329170,11329862-11329907,
           11330185-11330256,11332292-11332303,11332880-11332942,
           11333038-11333192,11333303-11333367,11334645-11334795,
           11335230-11335335,11335440-11335575,11336310-11336374,
           11337003-11337188,11337298-11337399
          Length = 426

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 469 KSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGSVLL 344
           K  +  P  +K+G   +  +  +  +C+E+F +FP LG   L
Sbjct: 373 KKPKRKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLGRFTL 414


>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
          Length = 1135

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 88  NYKIMLHYKPCKKYRKGMSL*P-FFPSK 168
           N   M    PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,102,709
Number of Sequences: 37544
Number of extensions: 219473
Number of successful extensions: 543
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)