Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0338.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 66   2e-11
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           34   0.057
SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)                   27   6.5  
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)            27   8.6  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 27/40 (67%), Positives = 34/40 (85%)
 Frame = -1

Query: 475 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 356
           +GK  E NPK IK+GDAA+V ++PSKP+CVE+F EFPPLG
Sbjct: 242 SGKKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLG 281



 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 23/33 (69%), Positives = 26/33 (78%)
 Frame = -3

Query: 362 PRVXFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
           P   FAVRDM+QTVAVGVIK+V+  EA GGK T
Sbjct: 279 PLGRFAVRDMKQTVAVGVIKSVDKTEAAGGKTT 311


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 34.3 bits (75), Expect = 0.057
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 475 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGSVLL 344
           TGK  +  P+ IK    AI  L     +C+E F +F  +G   L
Sbjct: 500 TGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTL 543


>SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +1

Query: 58  FQIYYV*PYINYKIMLHYKPCKKYRKGMSL*PFFPSK-H-LSVNEVSQL 198
           +QI+Y+  Y   KI +H++  K  RK + L  FFPS  H +    +SQL
Sbjct: 308 YQIFYILEYTG-KISIHWRYLKITRKYLLLLAFFPSALHPICYGNISQL 355


>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1016

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 345 SKTDPRGGNSWKDSTHRGLEGTKLTMAASPDLMD 446
           +  DP     WK +  +G + TK T  + PDL+D
Sbjct: 628 NSNDPGARPKWKGNEIKGNDETKSTYLSLPDLVD 661


>SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)
          Length = 461

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -1

Query: 220 VNSTIFHTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNLYKVIHNISE 59
           V++ +    A++  P  V K+KR   SFL    Y    V +F ++ +V+H ++E
Sbjct: 3   VSTDLAKLEAVISWP--VPKKKRELQSFLGLCTYYRKYVKMFADIARVLHRLTE 54


>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
          Length = 80

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 424 AIVNLVPSKPLCVESFQEFPPLGSVLL 344
           A V L  S+P+CVE ++++  LG  +L
Sbjct: 40  AEVELQTSRPVCVELYKDYKDLGRFML 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,894,456
Number of Sequences: 59808
Number of extensions: 246765
Number of successful extensions: 614
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)