Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0338.Seq
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 60 9e-10
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 60 9e-10
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 60 9e-10
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 1.9
AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi dom... 27 7.6
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 27 10.0
AF047657-1|AAK18951.1| 328|Caenorhabditis elegans Serpentine re... 27 10.0
AC024791-32|AAY55887.1| 212|Caenorhabditis elegans Hypothetical... 27 10.0
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 60.1 bits (139), Expect = 9e-10
Identities = 26/40 (65%), Positives = 31/40 (77%)
Frame = -1
Query: 475 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 356
TGK E PK +KSGDA IV L+P+KPLCVESF ++ PLG
Sbjct: 349 TGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLG 388
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/33 (66%), Positives = 24/33 (72%)
Frame = -3
Query: 362 PRVXFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
P FAVRDMRQTVAVGVIK+V + GKVT
Sbjct: 386 PLGRFAVRDMRQTVAVGVIKSVEKSDGSSGKVT 418
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 60.1 bits (139), Expect = 9e-10
Identities = 26/40 (65%), Positives = 31/40 (77%)
Frame = -1
Query: 475 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 356
TGK E PK +KSGDA IV L+P+KPLCVESF ++ PLG
Sbjct: 383 TGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLG 422
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/33 (66%), Positives = 24/33 (72%)
Frame = -3
Query: 362 PRVXFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
P FAVRDMRQTVAVGVIK+V + GKVT
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKSVEKSDGSSGKVT 452
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 60.1 bits (139), Expect = 9e-10
Identities = 26/40 (65%), Positives = 31/40 (77%)
Frame = -1
Query: 475 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 356
TGK E PK +KSGDA IV L+P+KPLCVESF ++ PLG
Sbjct: 383 TGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLG 422
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/33 (66%), Positives = 24/33 (72%)
Frame = -3
Query: 362 PRVXFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
P FAVRDMRQTVAVGVIK+V + GKVT
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKSVEKSDGSSGKVT 452
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -1
Query: 157 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 50
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi
domain-containing protein2 protein.
Length = 975
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 202 HTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNL 86
H TA L S K V+ K+ F+ + ++ C+ LF+ L
Sbjct: 107 HITAELSSKKEVTFTKKGKEDFIVHDRHEKCSAILFHAL 145
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
F25C8.3b protein.
Length = 3175
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 499 NQSKRXPXTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 359
N+ K+ P T + + ++ DA N+VP L V+ +QE L
Sbjct: 2929 NKMKQKPGTDQEAAWQTEILEKLDAKSHNIVPPSILLVKCYQELQQL 2975
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
F25C8.3a protein.
Length = 3184
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 499 NQSKRXPXTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 359
N+ K+ P T + + ++ DA N+VP L V+ +QE L
Sbjct: 2938 NKMKQKPGTDQEAAWQTEILEKLDAKSHNIVPPSILLVKCYQELQQL 2984
>AF047657-1|AAK18951.1| 328|Caenorhabditis elegans Serpentine
receptor, class j protein54 protein.
Length = 328
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 228 LELLTAQFFIQLRYFIHRKVFRRKKGLQTHSFSIFFT 118
+ L+ A + + L +FI+R + L TH F + T
Sbjct: 96 ISLVAASYAVLLTHFIYRYLVIHNSSLATHKFHWYLT 132
>AC024791-32|AAY55887.1| 212|Caenorhabditis elegans Hypothetical
protein Y47G6A.31 protein.
Length = 212
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 97 FYNLYKVIHNISETFCYDC 41
F +L K++ N TFCY C
Sbjct: 44 FQHLPKLLENCGHTFCYSC 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,463,055
Number of Sequences: 27780
Number of extensions: 196922
Number of successful extensions: 503
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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