Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0338.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    75   5e-16
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    75   5e-16
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    45   5e-07
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   1.0  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   1.0  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   1.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.3  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   7.1  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   7.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.4  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   9.4  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 74.5 bits (175), Expect = 5e-16
 Identities = 33/40 (82%), Positives = 37/40 (92%)
 Frame = -1

Query: 475 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 356
           TGK+TE NPKSIKSGDAAIV L P+KP+CVE+FQEFPPLG
Sbjct: 383 TGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLG 422



 Score = 45.2 bits (102), Expect = 4e-07
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = -3

Query: 362 PRVXFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
           P   FAVRDMRQTVAVGVIK+V FK+   GKVT
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKSVTFKDT-QGKVT 451


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 74.5 bits (175), Expect = 5e-16
 Identities = 33/39 (84%), Positives = 36/39 (92%)
 Frame = -1

Query: 472 GKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 356
           GK+TE NPKSIKSGDAAIV LVPSKP+C E+FQEFPPLG
Sbjct: 384 GKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLG 422



 Score = 48.8 bits (111), Expect = 3e-08
 Identities = 26/33 (78%), Positives = 27/33 (81%)
 Frame = -3

Query: 362 PRVXFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
           P   FAVRDMRQTVAVGVIKAV FK+A  GKVT
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKAVTFKDA-AGKVT 451


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 44.8 bits (101), Expect = 5e-07
 Identities = 21/26 (80%), Positives = 23/26 (88%)
 Frame = -1

Query: 475 TGKSTEVNPKSIKSGDAAIVNLVPSK 398
           TGK+TE NPKSIKSGDAAIV L P+K
Sbjct: 94  TGKTTEENPKSIKSGDAAIVMLQPTK 119


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 185 KYRSCMKNCAVNSSSYFLPLVAF 253
           K+  C+KN A   SSYF+  + F
Sbjct: 94  KFYDCLKNSADTISSYFVGKMYF 116


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 185 KYRSCMKNCAVNSSSYFLPLVAF 253
           K+  C+KN A   SSYF+  + F
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYF 121


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 185 KYRSCMKNCAVNSSSYFLPLVAF 253
           K+  C+KN A   SSYF+  + F
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYF 121


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 146 CSPFFLRNTFR*MKYRSCMKN 208
           C  FF R+  + ++YR C KN
Sbjct: 87  CKGFFRRSIQQKIQYRPCTKN 107


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 454 NPKSIKSGDAAIVNLVPSKPLC 389
           NP+    G   +V L PS P C
Sbjct: 66  NPEHKPPGPKDLVYLEPSPPFC 87


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 454 NPKSIKSGDAAIVNLVPSKPLC 389
           NP+    G   +V L PS P C
Sbjct: 67  NPEHKPPGPKDLVYLEPSPPFC 88


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 432 EMQPLSTWYLPSL 394
           +  P+  WY+PSL
Sbjct: 589 DKNPVQLWYVPSL 601


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 344 QQNXPEGWE 370
           QQ+ P+GWE
Sbjct: 79  QQSMPDGWE 87


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/27 (22%), Positives = 14/27 (51%)
 Frame = +1

Query: 370 IPGRTLHIEAWKVPS*QWLHLQT*WIL 450
           +P     +  W VP+ + +H+   W++
Sbjct: 13  LPAGPPRLLGWNVPAEELIHIPEHWLV 39


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 155 FFLRNTFR*MKYRSCMKN 208
           FF R+  + ++YR C KN
Sbjct: 41  FFRRSIQQKIQYRPCTKN 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,347
Number of Sequences: 438
Number of extensions: 2498
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)