Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0338.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 54 5e-08
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 54 5e-08
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 54 5e-08
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 54 5e-08
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 50 7e-07
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 38 0.005
At4g27900.2 68417.m04005 expressed protein 32 0.25
At4g27900.1 68417.m04004 expressed protein 32 0.25
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 31 0.43
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 29 2.3
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 28 4.0
At2g04500.1 68415.m00455 DC1 domain-containing protein contains ... 27 7.0
At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i... 27 9.3
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 54.0 bits (124), Expect = 5e-08
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = -1
Query: 475 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 356
+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLG
Sbjct: 371 SGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLG 410
Score = 46.0 bits (104), Expect = 1e-05
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -3
Query: 362 PRVXFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
P FAVRDMRQTVAVGVIK+V+ K+ G KVT
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVT 440
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 54.0 bits (124), Expect = 5e-08
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = -1
Query: 475 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 356
+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLG
Sbjct: 371 SGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLG 410
Score = 46.0 bits (104), Expect = 1e-05
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -3
Query: 362 PRVXFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
P FAVRDMRQTVAVGVIK+V+ K+ G KVT
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVT 440
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 54.0 bits (124), Expect = 5e-08
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = -1
Query: 475 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 356
+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLG
Sbjct: 371 SGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLG 410
Score = 46.0 bits (104), Expect = 1e-05
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -3
Query: 362 PRVXFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
P FAVRDMRQTVAVGVIK+V+ K+ G KVT
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVT 440
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 54.0 bits (124), Expect = 5e-08
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = -1
Query: 475 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 356
+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLG
Sbjct: 371 SGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLG 410
Score = 46.0 bits (104), Expect = 1e-05
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -3
Query: 362 PRVXFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
P FAVRDMRQTVAVGVIK+V+ K+ G KVT
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVT 440
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 50.4 bits (115), Expect = 7e-07
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = -1
Query: 475 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 356
TG E PK +K+ +AAI+N+ P+KP+ VE++ +PPLG
Sbjct: 37 TGHEIEKEPKFLKNSEAAIINMTPTKPMVVEAYSAYPPLG 76
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/31 (61%), Positives = 22/31 (70%)
Frame = -3
Query: 362 PRVXFAVRDMRQTVAVGVIKAVNFKEAGGGK 270
P FA+RDMRQTV VGVIK+V K+ G K
Sbjct: 74 PLGRFAIRDMRQTVGVGVIKSVVKKDPSGAK 104
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 37.5 bits (83), Expect = 0.005
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = -1
Query: 481 PXTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGSVLL 344
P TG+ T+ +P+ + + +A++ + P+CVE+F E LG V L
Sbjct: 603 PKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSESRALGRVFL 648
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.25
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 451 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 359
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.25
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 451 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 359
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 31.1 bits (67), Expect = 0.43
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 442 IKSGDAAIVNLVPSKPLCVESFQEFPPLGSVLL 344
+K+G A + + + +C+E F +FP LG L
Sbjct: 478 VKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTL 510
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = -1
Query: 127 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 29
I+ K C+ V LFY ++ N S FCY C+L+C
Sbjct: 619 IYLKPCHIFKVGLFYKEVEIARNDGNSRLFCYICRLRC 656
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = -1
Query: 127 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 29
I+ K C+ V L+Y ++ N S FCY C+L+C
Sbjct: 579 IYLKPCHIFKVGLYYKEVEIARNDGNSRLFCYTCELRC 616
>At2g04500.1 68415.m00455 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 495
Score = 27.1 bits (57), Expect = 7.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -1
Query: 73 HNISETFCYDCKLKCKF 23
+ ++ FC+ C+L+CKF
Sbjct: 444 NGVTRPFCFHCELRCKF 460
>At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD)
identical to Homeobox protein LUMINIDEPENDENS
(Swiss-Prot:Q38796) [Arabidopsis thaliana]
Length = 953
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 469 KSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 359
K+++ +P GD+ IV P KPL + S ++ PP+
Sbjct: 447 KNSKKDPLPSAIGDSKIV--APEKPLALHSAKDSPPI 481
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,843,613
Number of Sequences: 28952
Number of extensions: 179366
Number of successful extensions: 471
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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