Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0337.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1113 - 30986757-30986780,30986781-30987273,30987437-309879...    28   4.0  
04_04_1466 - 33799104-33799229,33799659-33799669,33800052-338002...    27   5.3  
02_02_0288 - 8603033-8603436,8603611-8603862,8604530-8605022           27   5.3  
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901...    27   7.0  
07_03_0546 - 19325526-19326054,19327109-19327631,19327898-193281...    27   9.2  

>04_04_1113 -
           30986757-30986780,30986781-30987273,30987437-30987959,
           30988361-30988615,30988812-30988926,30989026-30989078,
           30989213-30989265,30989419-30989473,30989549-30989599,
           30989776-30990024,30990122-30990350,30990994-30991305
          Length = 803

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = -2

Query: 298 NFGNEVKIDNEIXSTLLKPLIVEILSTMNHVLLMNLRVLYPQIQTETPLV 149
           N+G+++K D+E+   L K L+ ++   +  +    L ++Y +I    P +
Sbjct: 531 NYGSKLKYDSEVKKKLSKDLMRKLGPNLGTIRAPGLGLVYSEIVKGVPAI 580


>04_04_1466 -
           33799104-33799229,33799659-33799669,33800052-33800200,
           33800261-33800299,33800690-33800746,33800839-33801628,
           33801705-33801980,33802051-33802117,33802211-33802285,
           33802618-33802812,33802927-33803076,33803152-33803522,
           33804070-33804193,33804246-33804275,33804306-33804417,
           33804919-33804985,33805138-33805180,33805768-33805872
          Length = 928

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = -2

Query: 328 AXSKTVDSAANFGNEVKIDNEIXSTLLKPLIVEILSTMNHVLLMNLRVLYPQIQTE 161
           A S++VDSA +  ++ + ++EI +  +  +  EI   +  VLL     L+ +I T+
Sbjct: 381 ADSRSVDSAKSTDDDEEDEDEIEAARMAAMNQEIKRVLTEVLLKVTDDLFDEIATK 436


>02_02_0288 - 8603033-8603436,8603611-8603862,8604530-8605022
          Length = 382

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 286 HYQNWXHYQQFYFXQHDST 342
           H   W HY  F F QHDS+
Sbjct: 88  HPGRWSHYFAFVFVQHDSS 106


>01_06_1729 +
           39486553-39487413,39487953-39488020,39489574-39490154,
           39490623-39491432,39491738-39493035
          Length = 1205

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 242 SDCRNIIDHESCFAN-EFKGXIPTNSDGDTSSSRVEXK 132
           ++CR I  H S   +  F+   P+N + +T SSR++ K
Sbjct: 290 AECRGICGHFSRILSLRFQSWEPSNGEMETRSSRIKEK 327


>07_03_0546 -
           19325526-19326054,19327109-19327631,19327898-19328152,
           19328283-19328472,19328473-19328525,19329295-19329555,
           19329670-19329720,19329873-19330121,19330225-19330453,
           19332245-19332559
          Length = 884

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = -2

Query: 298 NFGNEVKIDNEIXSTLLKPLIVEILSTMNHVLLMNLRVLYPQIQTETP 155
           N+G ++K + E+   L   L++E+   +  V +  + +LY ++    P
Sbjct: 608 NYGTKLKYETEVKQKLSMDLLMELGCNLGTVRVPGIGLLYNELARGVP 655


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,441,636
Number of Sequences: 37544
Number of extensions: 98036
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)