Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0337.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19490.2 68417.m02867 expressed protein                             28   2.5  
At4g19490.1 68417.m02866 expressed protein                             28   2.5  
At2g25660.1 68415.m03075 expressed protein                             27   4.4  
At4g24310.1 68417.m03490 expressed protein contains Pfam profile...    27   5.9  
At4g33530.1 68417.m04765 potassium transporter family protein si...    27   7.7  

>At4g19490.2 68417.m02867 expressed protein
          Length = 1054

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -2

Query: 316 TVDSAANFGNEVKIDNEIXSTL---LKPLIVEILST 218
           ++ S  N G EVK++ E  STL   L PL++ +L T
Sbjct: 366 SISSNGNTGEEVKLEEEDTSTLCDRLLPLVIGLLRT 401


>At4g19490.1 68417.m02866 expressed protein
          Length = 1054

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -2

Query: 316 TVDSAANFGNEVKIDNEIXSTL---LKPLIVEILST 218
           ++ S  N G EVK++ E  STL   L PL++ +L T
Sbjct: 366 SISSNGNTGEEVKLEEEDTSTLCDRLLPLVIGLLRT 401


>At2g25660.1 68415.m03075 expressed protein 
          Length = 2146

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 292  GNEVKIDNEIXSTLLKPLIVEILSTMNHVLLMNLRVLYPQI 170
            G    ++ EI    +KP +   LS M  VL   LR++YP I
Sbjct: 1864 GKSNSVEKEIEEVKMKPNMDIRLSDMKLVLGPELRIMYPLI 1904


>At4g24310.1 68417.m03490 expressed protein contains Pfam profile
           PF05078: Protein of unknown function (DUF679)
          Length = 213

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 349 REMWNHAAXSKTVDSAANFGNEVKIDNEIXSTLLKPL 239
           R+   HA  S+T+ SAAN  N +     +  TLL P+
Sbjct: 27  RQTSQHAVMSQTLTSAANLANLLPTGTLLAFTLLIPV 63


>At4g33530.1 68417.m04765 potassium transporter family protein
           similar to K+ transporter HAK5 [Arabidopsis thaliana]
           GI:7108597; KUP/HAK/KT Transporter family member,
           PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 855

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/50 (22%), Positives = 26/50 (52%)
 Frame = -2

Query: 298 NFGNEVKIDNEIXSTLLKPLIVEILSTMNHVLLMNLRVLYPQIQTETPLV 149
           N+G+++K + E+   L   L+ E+ S +  +    + +LY ++    P +
Sbjct: 576 NYGSKLKYETEVQKKLPMDLLRELGSNLGTIRAPGIGLLYNELAKGVPAI 625


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,498,985
Number of Sequences: 28952
Number of extensions: 92154
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)