Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0336.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2XKX5 Cluster: Putative uncharacterized protein; n=2; ...    33   3.6  
UniRef50_Q4Y351 Cluster: Putative uncharacterized protein; n=5; ...    33   3.6  
UniRef50_UPI000057C40A Cluster: hypothetical protein MS53_0454; ...    32   6.2  
UniRef50_UPI00000267F1 Cluster: PREDICTED: hypothetical protein;...    32   8.2  
UniRef50_Q4XMC5 Cluster: Putative uncharacterized protein; n=1; ...    32   8.2  

>UniRef50_A2XKX5 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 512

 Score = 33.1 bits (72), Expect = 3.6
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = -3

Query: 392 ILNLFGGEFV*LCISQNAKVGVSTCFSFLLNSTVMCFAHFQAANRFCFSNSFHALNTHKN 213
           I N F   F+  C+  + + G+++ +   +   +  F H  AA   CF   +  LNT + 
Sbjct: 346 ITNKFKRSFMAECMIYDVEAGMNSLWKINIPEDLPWFLHETAAAGLCFL-QYCNLNTLRT 404

Query: 212 MYVLGESLFLSYLI 171
            ++L  SLFL   I
Sbjct: 405 KFILSISLFLGLSI 418


>UniRef50_Q4Y351 Cluster: Putative uncharacterized protein; n=5;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 926

 Score = 33.1 bits (72), Expect = 3.6
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 314 SFLLNSTVMCFAHFQAANRFCFSNSFHALNTHKNMYVLGESLFLSYLIIVL 162
           SFL  S    +   Q  N++      + LN  KN Y+L ++ FL+Y II++
Sbjct: 734 SFLKESIYFKYIDTQLMNKYIHGTKIYTLN--KNEYLLKDNTFLNYAIIII 782


>UniRef50_UPI000057C40A Cluster: hypothetical protein MS53_0454;
           n=1; Mycoplasma synoviae 53|Rep: hypothetical protein
           MS53_0454 - Mycoplasma synoviae 53
          Length = 208

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = -2

Query: 318 FFFFIK*YCHVF-C-SFSSCKSILFFKFLPCTEYT*KYVCS---GRIFIFILFNYCSFFY 154
           FFF++  +C  F C  F  C+S     F  C  ++    CS    R + F  FN+ +F++
Sbjct: 30  FFFYLSSFCRSFSCYFFCCCRSHFSLWFFFCFYFSFSSWCSFFNSRFYSFFSFNFFNFYF 89

Query: 153 LL*TFLMNSC 124
                  +SC
Sbjct: 90  FSSYCFSSSC 99


>UniRef50_UPI00000267F1 Cluster: PREDICTED: hypothetical protein;
           n=1; Mus musculus|Rep: PREDICTED: hypothetical protein -
           Mus musculus
          Length = 382

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -2

Query: 291 HVFCSFSSCKSILFFKFLPCT---EYT*KYVCSGRIFIFILFNY 169
           H   S  SC+  +F K LPCT   + T KY CSG    ++  NY
Sbjct: 192 HEAFSSESCEETMFNKTLPCTISEDTTDKYECSGSPKSYVPENY 235


>UniRef50_Q4XMC5 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 469

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = -2

Query: 321 MFFFFIK*YCHVFCSFSSCKSILFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL*T 142
           + + +++ Y H F         LF  FLP      K      IF  IL  Y  FF+ L  
Sbjct: 34  VLYKYVEYYLHTFLEHGFVCIYLFVAFLPTKNVYKKRSKYNYIFAKILLIY--FFFFLFH 91

Query: 141 FLMNSCNNF 115
           F++N  NNF
Sbjct: 92  FIINIKNNF 100


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 410,119,610
Number of Sequences: 1657284
Number of extensions: 7472841
Number of successful extensions: 14811
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14798
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)