Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0336.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        31   0.13 
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.1  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   2.7  
SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    25   4.8  

>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -2

Query: 321 MFFFFIK*YCHVFCSFSSCKSILF--FKFLPCTEYT*KYVCSGRIFIFILFNYCSFF 157
           MFFF +   C VF  FS C  ++   F FL  T +    +C    F  +L   CS +
Sbjct: 1   MFFFLVFSACEVFVGFSLCTLVISVPFFFLQMTPFY-SILCFLSFFALLLHLPCSIY 56


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 304 NKKEKHVLTPTLAF*DIHNQTNSPPNKFKIALMQKCPAQCSGSSFK 441
           N+K++H  T   A         S   K K+A ++K P+  +G SFK
Sbjct: 58  NRKKRHTKTYVEALESQLANMESTLAKIKVAPVEKIPSLLAGISFK 103


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 204  SGRIFIFILFNYCSFFYLL*TFLMNSCNNF 115
            SG    F+LFN  S  Y+L  F+    +N+
Sbjct: 1187 SGNAMFFVLFNLVSMIYILTLFIAIIISNY 1216


>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 251 FSNSFHALNTHKNMYVLGESLFLSY 177
           +S  FH +N + N YVL +   L+Y
Sbjct: 98  YSQVFHLVNNNGNYYVLNDLFRLNY 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,842,054
Number of Sequences: 5004
Number of extensions: 35779
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)