Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0336.Seq
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59161| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8) 29 1.6
SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94) 28 3.7
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_53460| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19) 27 8.6
>SB_59161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -2
Query: 312 FFIK*YCHVFCSFSSCKSILFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL 148
F I YC +F + + LF + C+ + + R +F+++ YCS F L+
Sbjct: 40 FMIYAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHAR--LFMIYAYCSLFVLI 92
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -2
Query: 312 FFIK*YCHVFCSFSSCKSILFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL 148
F I YC +F + + LF + C+ + + R +F+++ YCS F L+
Sbjct: 140 FMIYAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHAR--LFMIYAYCSLFVLI 192
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -2
Query: 312 FFIK*YCHVFCSFSSCKSILFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL 148
F I YC +F + + LF + C+ + + R +F+++ YCS F +
Sbjct: 240 FMIYAYCSLFVFITIVHACLFMIYAYCSLFVLITIVHAR--LFMIYAYCSLFVFI 292
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -2
Query: 312 FFIK*YCHVFCSFSSCKSILFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL 148
F I YC +F + + LF + C+ + + R +F+++ YCS F +
Sbjct: 160 FMIYAYCSLFVLITIVHARLFMIYAYCSLFVLITIVHAR--LFMIYAYCSLFVFI 212
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -2
Query: 312 FFIK*YCHVFCSFSSCKSILFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL 148
F I YC +F + + LF + C+ + + R +F+++ YCS F +
Sbjct: 180 FMIYAYCSLFVLITIVHARLFMIYAYCSLFVFITIVHAR--LFMIYAYCSLFVFI 232
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -2
Query: 312 FFIK*YCHVFCSFSSCKSILFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL 148
F I YC +F + + LF + C+ + + R +F+++ YCS F +
Sbjct: 200 FMIYAYCSLFVFITIVHARLFMIYAYCSLFVFITIVHAR--LFMIYAYCSLFVFI 252
>SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)
Length = 347
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -2
Query: 312 FFIK*YCHVFCSFSSCKSILFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL 148
F I YC +F + + LF + C+ + + R +F+++ YCS F L+
Sbjct: 139 FMIYAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHAR--LFMIYAYCSLFVLI 191
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -2
Query: 312 FFIK*YCHVFCSFSSCKSILFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL 148
F I YC +F + + LF + C+ + + R +F+++ YCS F +
Sbjct: 159 FMIYAYCSLFVLITIVHARLFMIYAYCSLFVLITIVHAR--LFMIYAYCSLFVFI 211
>SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)
Length = 310
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 312 FFIK*YCHVFCSFSSCKSILFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYL 151
F I YC +F + + LF + C+ + + R +F+++ YCS F L
Sbjct: 239 FMIYAYCSLFVFITIVHACLFMIYAYCSLFVLITIIHAR--LFMIYAYCSLFCL 290
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -2
Query: 312 FFIK*YCHVFCSFSSCKSILFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL 148
F I YC +F + + LF + C+ + + R +F++ YCS F L+
Sbjct: 139 FMIYAYCSLFVLITIVHACLFMIYAFCSLFVLITIVHAR--LFMIHAYCSLFVLI 191
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -2
Query: 312 FFIK*YCHVFCSFSSCKSILFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL 148
F I YC +F + + LF + C+ + + R +F+++ YCS F +
Sbjct: 199 FMIYAYCSLFVLITIIHACLFMIYAFCSLFVLITIVHAR--LFMIYAYCSLFVFI 251
>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4275
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +1
Query: 298 LFNKKEKHVLTPTLAF*DIHNQTNSPPNKFKIALMQKCP 414
LFN+ E +P LA DI N PP+K AL Q CP
Sbjct: 3509 LFNR-EDITTSPLLA--DIKNTKFVPPHKVSEALSQLCP 3544
>SB_53460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = -3
Query: 320 CFSFLLNSTVMCFAHFQAANRFCFSNSFHALNTHKNMYVLGESLFLSYLIIVLSFIYSEL 141
C+S+L S +C+++ + C+S +L + G ++ SYL + YS L
Sbjct: 22 CYSYLSRSLFVCYSYLSRSLFVCYSYLSRSLFVCYSYLSRGMIVYYSYLSPSMIVCYSIL 81
>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
Length = 1211
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 320 CFSFLLNSTVMCFAHFQAANRFCFS 246
CF+FL ST CF + + CF+
Sbjct: 702 CFTFLTLSTKPCFTPLTLSTKLCFT 726
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,793,876
Number of Sequences: 59808
Number of extensions: 233759
Number of successful extensions: 343
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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