Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0336.Seq
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28944-9|AAL02438.1| 122|Caenorhabditis elegans Hypothetical pr... 28 3.3
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical... 27 7.6
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical... 27 7.6
U49830-9|AAV58880.1| 336|Caenorhabditis elegans Hypothetical pr... 27 7.6
U49830-8|AAK31475.1| 439|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr... 27 10.0
U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical pr... 27 10.0
U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical pr... 27 10.0
AF024492-3|AAF98619.1| 918|Caenorhabditis elegans Hypothetical ... 27 10.0
>U28944-9|AAL02438.1| 122|Caenorhabditis elegans Hypothetical
protein C18A3.9 protein.
Length = 122
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 207 CSGRIFIFILFNYCSFFYLL*TFLMNSCNN 118
CS R I I+ N+ F Y + L+N CNN
Sbjct: 74 CSIRCAIIIVNNFFVFMYYIFLVLVNVCNN 103
>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform b
protein.
Length = 1250
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 269 AANRFCFSNSFHALNTHKNMYVLGES 192
A++R FSN H L + + Y LG+S
Sbjct: 324 ASSRLIFSNGTHLLESEIDQYALGDS 349
>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform a
protein.
Length = 2456
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 269 AANRFCFSNSFHALNTHKNMYVLGES 192
A++R FSN H L + + Y LG+S
Sbjct: 324 ASSRLIFSNGTHLLESEIDQYALGDS 349
>U49830-9|AAV58880.1| 336|Caenorhabditis elegans Hypothetical
protein C33F10.7b protein.
Length = 336
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = -3
Query: 407 FCI----KAILNLFGGEFV*LCISQNAKVGVSTCFSFLLNSTVMCFA 279
FC+ K I++L+GG C + + +ST FS + T +CFA
Sbjct: 40 FCVIHKGKVIVDLWGGYADKECFKEWKEDTISTIFSCTKSVTAICFA 86
>U49830-8|AAK31475.1| 439|Caenorhabditis elegans Hypothetical
protein C33F10.7a protein.
Length = 439
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = -3
Query: 407 FCI----KAILNLFGGEFV*LCISQNAKVGVSTCFSFLLNSTVMCFA 279
FC+ K I++L+GG C + + +ST FS + T +CFA
Sbjct: 65 FCVIHKGKVIVDLWGGYADKECFKEWKEDTISTIFSCTKSVTAICFA 111
>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical protein
T08G11.1b protein.
Length = 3185
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1
Query: 202 RTYIFLCVFSA---WKEFEKQNRFAA*K*AKHMTVLFNKKEKHVLTP 333
R I++ + S+ W+E K+ RF K+M VL K + H++TP
Sbjct: 2559 REIIYMAISSSDILWEEEVKKGRFKPLA-VKYMQVLEEKYQAHLVTP 2604
>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical protein
T08G11.1a protein.
Length = 3212
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1
Query: 202 RTYIFLCVFSA---WKEFEKQNRFAA*K*AKHMTVLFNKKEKHVLTP 333
R I++ + S+ W+E K+ RF K+M VL K + H++TP
Sbjct: 2586 REIIYMAISSSDILWEEEVKKGRFKPLA-VKYMQVLEEKYQAHLVTP 2631
>U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical
protein R12C12.3 protein.
Length = 340
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = -2
Query: 297 YCHVFCSFSSCKSILFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFF 157
+CH+F F +F FL T + + IF+ I +FF
Sbjct: 242 FCHLFSMFLKVAESIFGGFLTQTSFYWEVFAEFTIFLIIFHTSSTFF 288
>U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical
protein D1044.7 protein.
Length = 400
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 356 CISQNAKVGVSTCFSFLLNSTVM-CFAHFQAANRFCFSNSFHALNTHKN 213
C SQN + G ++ + V+ CF + Q A+ + SN NT+ N
Sbjct: 69 CHSQNTQCGTNSSPQVSASGQVVTCFTNSQCASGYICSNGACCPNTNSN 117
>AF024492-3|AAF98619.1| 918|Caenorhabditis elegans Hypothetical
protein F14F9.4 protein.
Length = 918
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 212 YFYVYSVHGRNLKNKIDLQLENEQN 286
+ Y+ S + RN+KN ++ +EN +N
Sbjct: 853 WMYMTSQYDRNIKNTLESMMENRKN 877
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,156,158
Number of Sequences: 27780
Number of extensions: 204898
Number of successful extensions: 467
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -