Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0334.Seq
         (578 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SSI8 Cluster: Chromosome 15 SCAF14367, whole genome s...    37   0.39 
UniRef50_A4CDL0 Cluster: Methyl-accepting chemotaxis protein; n=...    35   1.2  
UniRef50_UPI00015A7DE6 Cluster: LOC553438 protein; n=1; Danio re...    34   2.8  
UniRef50_A5ZC69 Cluster: Putative uncharacterized protein; n=1; ...    33   3.7  

>UniRef50_Q4SSI8 Cluster: Chromosome 15 SCAF14367, whole genome
           shotgun sequence; n=2; Tetraodon nigroviridis|Rep:
           Chromosome 15 SCAF14367, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 166

 Score = 36.7 bits (81), Expect = 0.39
 Identities = 21/53 (39%), Positives = 29/53 (54%)
 Frame = +2

Query: 224 LCPILIFVFLYYSLA*HHHPYFDVKTSYSSMEPAARPKNMTRAALPRSEAFHD 382
           LCP L+  F+YYS    H P +  KT  ++ E AA P   T+ A  R+E  +D
Sbjct: 15  LCPTLVLGFIYYSSRKLHLPAWGQKTQGAAEESAAAP---TKGAEVRAETVYD 64


>UniRef50_A4CDL0 Cluster: Methyl-accepting chemotaxis protein; n=1;
           Pseudoalteromonas tunicata D2|Rep: Methyl-accepting
           chemotaxis protein - Pseudoalteromonas tunicata D2
          Length = 762

 Score = 35.1 bits (77), Expect = 1.2
 Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +2

Query: 311 SMEPAARPKNMTRAALPRSEAFHDHVAKLALNFSN*RQFDDNKDAIMERRSQF--ESNLN 484
           +M+ AA+ K  T       E FH  + ++A+N        +N D+I ++ ++F  ++   
Sbjct: 507 AMDAAAKQKTQTEMVAAAVEQFHASIREVAMNTEQSSDSSENADSISKQSAEFAEQARQQ 566

Query: 485 IENVMTEIKR 514
           I+ ++T +K+
Sbjct: 567 IDKLVTGVKQ 576


>UniRef50_UPI00015A7DE6 Cluster: LOC553438 protein; n=1; Danio
           rerio|Rep: LOC553438 protein - Danio rerio
          Length = 581

 Score = 33.9 bits (74), Expect = 2.8
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +2

Query: 317 EPAARPKNMTRAALPRSEAFHDHVAKLALNFSN*RQFDDNKDAIMERRSQFESNLNIENV 496
           + A  PK++  +  P++EAF D  A+     +  R   +NK  + ER SQ  +  N+ NV
Sbjct: 434 QQAVSPKSILSSPPPKAEAFEDFKAEQGSEIN--RILKENKAVLSERTSQLRALTNVINV 491


>UniRef50_A5ZC69 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides caccae ATCC 43185|Rep: Putative
           uncharacterized protein - Bacteroides caccae ATCC 43185
          Length = 284

 Score = 33.5 bits (73), Expect = 3.7
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -1

Query: 260 YNIKIQKSKLGTDMYLLCCNVCSW*APHVSPIPMSEVILKSCGPKLVSE*LSG 102
           Y  +I+K KL     L    V  W  P  SP P+  V+L  CG  L  + +SG
Sbjct: 205 YKEEIEKDKLYVSFALSALIVNIWALPCFSPFPLRYVLLAICGCTLYKQPVSG 257


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,578,961
Number of Sequences: 1657284
Number of extensions: 11899266
Number of successful extensions: 28371
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28351
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39987623712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)