Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0334.Seq
         (578 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      23   1.9  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   3.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.3  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   4.3  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    22   4.3  

>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 226 QTCTCCVVTSAVGERPTSVRFPCPRS 149
           ++C CC  +   GER  SV   CP++
Sbjct: 85  RSCMCCQES---GEREASVSLFCPKA 107


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 49  FQIPVYFLLQQYCIVFQTPLSYSLT 123
           F IP+  LL  YCI+ +  +S + T
Sbjct: 246 FIIPLIILLILYCIIAKNLMSNAAT 270


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 100 TPLSYSLTNFGPQDFSMTSDMGIGLT 177
           +P SY+    GP   SM S MG+  T
Sbjct: 92  SPYSYANGAAGPIPVSMASKMGLAPT 117


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 249 FYIIVSPNIIIHILT 293
           F+I++  N+IIH+ T
Sbjct: 675 FHIVIGMNLIIHVGT 689


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 212 TGTCLCPILIFVFLYYSLA 268
           TG C+  +  FV  YY +A
Sbjct: 99  TGICVSNVFDFVHFYYPVA 117


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,214
Number of Sequences: 336
Number of extensions: 3181
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)