Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0334.Seq
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    27   2.6  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    26   4.6  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    26   4.6  
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce...    26   4.6  
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    25   6.1  
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    25   8.0  

>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 73  LQQYCIVFQTPLSYSLTNFGPQDFSMTSDMGIGLTW 180
           L+  C V+  PL    TNF PQ +       + L W
Sbjct: 688 LRYLCRVYPGPLRVGSTNFNPQVYWRLGVQMVALNW 723


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 101 HH*AIHSPTSDHRTSV*PRTWESD*RGALTNCRRYNTTGT 220
           H+  IH  T+   T V  RT     RG+ +NCRRY+   T
Sbjct: 9   HYSRIH--TTQLLTVVNHRTIPFKIRGSFSNCRRYSNFAT 46


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
 Frame = -2

Query: 328 CSRLHRTIRRFHVKIWMMMLGETII*KYKNQNWAQTCTCCVVTSAVG---ERPTSVRF-- 164
           C R  + +   +V  W  +L        KN N A TC+  + TSAV    + PT +    
Sbjct: 214 CLRFKKILSPRNVSFWKRLLKV----HKKNPNSAVTCSESINTSAVAKFTDIPTIIPIFL 269

Query: 163 -PCPRSY*SPVVRSW*VNSLVVSEIQYSIVGEGNKLVFENSFRTAGC 26
            P  +SY +  + S   +SL  S IQ    G+G +   E+++    C
Sbjct: 270 DPSYQSYAAKTIHS-DTSSLASSIIQ---TGDGTQSCDESTYIELAC 312


>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 109 SYSLTNFGPQDFSMTSDMGIGLTWGAHQLQTL 204
           S SLTN  P+ F+M     +GLT  A  +QTL
Sbjct: 32  SISLTNNFPKVFAMGDKTYLGLTGLATDVQTL 63


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 235 NWAQTCTCCVVTSAVGERPTSVRFPCPRS 149
           N + + TC V TS  GE  ++  F C  S
Sbjct: 222 NKSHSSTCAVATSGTGEHISNTCFACRSS 250


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 338 FSGVQPAPSNYKTFSRQNMD 279
           FS   P P  YK F+R+N++
Sbjct: 10  FSAFPPPPPYYKLFTRENIE 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,466
Number of Sequences: 5004
Number of extensions: 52541
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)