Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0334.Seq
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0051 - 345125-345693,345833-346925                               32   0.38 
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850           29   2.0  
03_05_0938 - 28978696-28978809,28978942-28979028,28979124-289792...    28   4.7  
02_04_0277 - 21494616-21494747,21494830-21494916,21495025-214951...    28   4.7  
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610...    28   6.2  
09_04_0715 + 19697134-19697211,19697212-19697300,19697416-196974...    27   8.2  
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128...    27   8.2  
03_06_0647 - 35267177-35267323,35267461-35267547,35268319-352684...    27   8.2  

>05_01_0051 - 345125-345693,345833-346925
          Length = 553

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +2

Query: 230 PILIFVFLYYSLA*HHHPYFDVKTSYSSMEPAARPKNMTRAALPRSEAFHDHVAKLALNF 409
           P    + L+ +L   HHP F  + S+ ++   A   +  R  LP + A H  + +  L F
Sbjct: 108 PFSALLSLFAALLRSHHPAFPARFSFPTLLSKASSSSSPRLHLPSALALHAQLLRRGLLF 167

Query: 410 S 412
           S
Sbjct: 168 S 168


>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
          Length = 1173

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = +3

Query: 21  KTHPAVLKLFSNTSLFPSPTILYCISDTTKLFTHQLRTTGLQYDLGHGNRTDVGRSPTAD 200
           K  PAV+K F+    FP P    C     K    +     L +D+ HG    V R+   +
Sbjct: 728 KATPAVVKAFTTAGQFPCPEPYVCSKLEGKTVEMKNSYHSLSFDVRHGLLQTVTRNKDGE 787

Query: 201 VT 206
            T
Sbjct: 788 HT 789


>03_05_0938 -
           28978696-28978809,28978942-28979028,28979124-28979256,
           28979592-28979865,28980242-28980368,28980523-28980773,
           28980854-28980935
          Length = 355

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 87  YCISDTTKLFTHQLRTTGLQYDLGHGNRTDVGRSPTADVTTQQ 215
           YC+    ++  ++  T G  YD+ HG +   G  P   +T  Q
Sbjct: 129 YCLELNNRIVLYEFATKGSLYDILHGKKGVKGAEPGPVLTWSQ 171


>02_04_0277 -
           21494616-21494747,21494830-21494916,21495025-21495157,
           21495267-21495540,21495829-21495955,21496048-21496311
          Length = 338

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 87  YCISDTTKLFTHQLRTTGLQYDLGHGNRTDVGRSP 191
           YC+ D  ++  +Q  T G  +++ HG +   G  P
Sbjct: 106 YCLEDGNRMLAYQFATMGSLHNILHGKKGVQGAEP 140


>10_02_0167 -
           6100676-6102111,6102174-6102708,6102967-6103975,
           6104006-6105036
          Length = 1336

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 377 GTPQSEVTPHESCFSGVQPAPSN 309
           G PQSE+TP +  F G+ P  S+
Sbjct: 557 GLPQSELTPTDQPFHGITPQSSS 579


>09_04_0715 +
           19697134-19697211,19697212-19697300,19697416-19697485,
           19697756-19697816,19698223-19698461,19698578-19698704,
           19698908-19699181,19699479-19699611,19700023-19700109,
           19700231-19700365
          Length = 430

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 87  YCISDTTKLFTHQLRTTGLQYDLGHGNRTDVGRSP 191
           YC+    +L  ++  T G  +D+ HG +   G  P
Sbjct: 197 YCVEGNQRLVAYEFATMGSLHDILHGRKGVPGAQP 231


>04_01_0123 -
           1283197-1283292,1283330-1284439,1284790-1285177,
           1285523-1287609
          Length = 1226

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 377 GTPQSEVTPHESCFSGVQPAPSN 309
           G PQSE+TP +  F G+ P  S+
Sbjct: 702 GIPQSELTPTDQPFYGITPQSSS 724


>03_06_0647 -
           35267177-35267323,35267461-35267547,35268319-35268451,
           35268571-35268620,35269131-35269202,35269782-35270004,
           35270331-35270604,35270687-35270813,35270942-35271189,
           35271682-35271772
          Length = 483

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +3

Query: 87  YCISDTTKLFTHQLRTTGLQYDLGHGNRTDVGRSPTADVT-TQQVHVC--AQF*FLYFYI 257
           YC+    ++  ++  T G  +D+ HG +   G  P   +  TQ+V +   A     Y + 
Sbjct: 131 YCVEGNYRILAYEFATMGSLHDVLHGRKGVQGAQPGPVLDWTQRVKIAIEAAKGLEYLHE 190

Query: 258 IVSPNII 278
            V P+II
Sbjct: 191 KVQPSII 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,479,246
Number of Sequences: 37544
Number of extensions: 322453
Number of successful extensions: 661
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)