Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0334.Seq
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_4786| Best HMM Match : VWA (HMM E-Value=3.5e-28)                    29   3.6  
SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_8268| Best HMM Match : Rabaptin (HMM E-Value=6.4)                   28   6.3  
SB_49709| Best HMM Match : UPAR_LY6 (HMM E-Value=1.8)                  27   8.4  

>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -1

Query: 389 PRDRGTPQSEVTPHESCFSGVQPAPS--NYKTFSRQN 285
           P   G+PQ+ +TPH   F    P+P   N   FS  N
Sbjct: 792 PTSTGSPQTPLTPHTPRFPNTAPSPGEPNKPPFSPSN 828


>SB_4786| Best HMM Match : VWA (HMM E-Value=3.5e-28)
          Length = 444

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 106 LSYSLTNFGPQDFSMTSDMGIGLTWGAHQLQTLQHNRYMSVPNFDFCIFIL 258
           + YS      +D    +D+ +G T G    Q L+HN   S+P   F +  L
Sbjct: 200 MQYSSIPIDVKDAHRRNDLDVGETTGYRANQALRHNVCASMPTLLFTLMFL 250


>SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1275

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 222 HVPVVL*RLQLVSAPRQSDSHVRGHTE 142
           HVP     +QL + P +SD+H RGH +
Sbjct: 133 HVPRNRSLVQLANKPLESDAHYRGHQD 159


>SB_8268| Best HMM Match : Rabaptin (HMM E-Value=6.4)
          Length = 214

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = +2

Query: 290 DVKTSYSSMEPAARPKNMTRAALPRSEAF-----HDHVAKLALNFSN*RQFDDNKDAIME 454
           DV  + S++  A+      RA   + +A+     +DH A +A   +N  +FDD K A+  
Sbjct: 29  DVMQTTSALYVASCHTRAQRAVFSQPKAYAEKLQNDHQAAIAFKRANDGEFDDIKRAVER 88

Query: 455 RRSQFESNLNIEN 493
           R +  E    + N
Sbjct: 89  RANAAEPEPAVSN 101


>SB_49709| Best HMM Match : UPAR_LY6 (HMM E-Value=1.8)
          Length = 437

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -1

Query: 347 ESCFSGVQPAPSNYKT----FSRQNMDDDVRRDYNI 252
           ESC+SG +P  +  KT    FS  + +DD   D NI
Sbjct: 125 ESCYSGDKPTKAEEKTEDLLFSDSDTEDDKSGDENI 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,339,178
Number of Sequences: 59808
Number of extensions: 381855
Number of successful extensions: 968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)