Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0334.Seq
         (578 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC021931-1|AAH21931.1|  345|Homo sapiens CCAAT/enhancer binding ...    32   1.7  
BC007538-1|AAH07538.1|  345|Homo sapiens CCAAT/enhancer binding ...    32   1.7  
BC005132-1|AAH05132.2|  137|Homo sapiens CEBPB protein protein.        32   1.7  
AY193834-1|AAN86350.1|  345|Homo sapiens CCAAT/enhancer binding ...    32   1.7  
AL161937-1|CAC14276.1|  345|Homo sapiens CCAAT/enhancer binding ...    32   1.7  
X52560-1|CAA36794.1|  345|Homo sapiens protein ( Human gene for ...    31   2.2  
D63161-1|BAA09637.1|   86|Homo sapiens NF-IL6 protein.                 30   6.8  

>BC021931-1|AAH21931.1|  345|Homo sapiens CCAAT/enhancer binding
           protein (C/EBP), beta protein.
          Length = 345

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
 Frame = -1

Query: 389 PRDRGTPQSEVTPHESCFSGVQPAPSNYKTFSRQNMD---DD--VRRD-YNIKIQKSK 234
           P    +P     P  +C++G  PAPS  K+ +++ +D   D+  +RR+  NI ++KS+
Sbjct: 232 PPGTPSPADAKAPPTACYAGAAPAPSQVKSKAKKTVDKHSDEYKIRRERNNIAVRKSR 289


>BC007538-1|AAH07538.1|  345|Homo sapiens CCAAT/enhancer binding
           protein (C/EBP), beta protein.
          Length = 345

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
 Frame = -1

Query: 389 PRDRGTPQSEVTPHESCFSGVQPAPSNYKTFSRQNMD---DD--VRRD-YNIKIQKSK 234
           P    +P     P  +C++G  PAPS  K+ +++ +D   D+  +RR+  NI ++KS+
Sbjct: 232 PPGTPSPADAKAPPTACYAGAAPAPSQVKSKAKKTVDKHSDEYKIRRERNNIAVRKSR 289


>BC005132-1|AAH05132.2|  137|Homo sapiens CEBPB protein protein.
          Length = 137

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
 Frame = -1

Query: 389 PRDRGTPQSEVTPHESCFSGVQPAPSNYKTFSRQNMD---DD--VRRD-YNIKIQKSK 234
           P    +P     P  +C++G  PAPS  K+ +++ +D   D+  +RR+  NI ++KS+
Sbjct: 24  PPGTPSPADAKAPPTACYAGAAPAPSQVKSKAKKTVDKHSDEYKIRRERNNIAVRKSR 81


>AY193834-1|AAN86350.1|  345|Homo sapiens CCAAT/enhancer binding
           protein (C/EBP), beta protein.
          Length = 345

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
 Frame = -1

Query: 389 PRDRGTPQSEVTPHESCFSGVQPAPSNYKTFSRQNMD---DD--VRRD-YNIKIQKSK 234
           P    +P     P  +C++G  PAPS  K+ +++ +D   D+  +RR+  NI ++KS+
Sbjct: 232 PPGTPSPADAKAPPTACYAGAAPAPSQVKSKAKKTVDKHSDEYKIRRERNNIAVRKSR 289


>AL161937-1|CAC14276.1|  345|Homo sapiens CCAAT/enhancer binding
           protein (C/EBP), beta protein.
          Length = 345

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
 Frame = -1

Query: 389 PRDRGTPQSEVTPHESCFSGVQPAPSNYKTFSRQNMD---DD--VRRD-YNIKIQKSK 234
           P    +P     P  +C++G  PAPS  K+ +++ +D   D+  +RR+  NI ++KS+
Sbjct: 232 PPGTPSPADAKAPPTACYAGAAPAPSQVKSKAKKTVDKHSDEYKIRRERNNIAVRKSR 289


>X52560-1|CAA36794.1|  345|Homo sapiens protein ( Human gene for
           nuclear factor NF-IL6. ).
          Length = 345

 Score = 31.5 bits (68), Expect = 2.2
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
 Frame = -1

Query: 389 PRDRGTPQSEVTPHESCFSGVQPAPSNYKTFSRQNMD---DD--VRRD-YNIKIQKSK 234
           P    +P     P  +C++G  PAPS  K+ +++ +D   D+  +RR+  NI ++KS+
Sbjct: 232 PPGTPSPADAKAPPTACYAGAGPAPSQVKSKAKKTVDKHSDEYKIRRERNNIAVRKSR 289


>D63161-1|BAA09637.1|   86|Homo sapiens NF-IL6 protein.
          Length = 86

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 6/46 (13%)
 Frame = -1

Query: 353 PHESCFSGVQPAPSNYKTFSRQNMD---DD--VRRD-YNIKIQKSK 234
           P  +C++G  PAPS  K+ +++ +D   D+  +RR+  NI ++KS+
Sbjct: 5   PPTACYAGAAPAPSQVKSKAKKTVDKHSDEYKIRRERNNIAVRKSR 50


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,977,144
Number of Sequences: 237096
Number of extensions: 1699800
Number of successful extensions: 3409
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3409
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5985693436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)