Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0334.Seq
(578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50796-2|CAA90669.2| 261|Caenorhabditis elegans Hypothetical pr... 32 0.34
U97008-6|AAB52307.1| 323|Caenorhabditis elegans Serpentine rece... 32 0.34
AF101309-3|AAN60514.1| 760|Caenorhabditis elegans Hypothetical ... 28 5.5
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 28 5.5
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ... 28 5.5
Z92780-8|CAI46553.1| 587|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z92780-7|CAI46552.1| 624|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z92780-6|CAI46551.1| 691|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z92780-5|CAI46550.1| 532|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z81068-16|CAJ30230.1| 587|Caenorhabditis elegans Hypothetical p... 27 7.3
Z81068-15|CAB02980.2| 624|Caenorhabditis elegans Hypothetical p... 27 7.3
Z81068-14|CAJ30229.1| 691|Caenorhabditis elegans Hypothetical p... 27 7.3
Z81068-13|CAJ30228.1| 532|Caenorhabditis elegans Hypothetical p... 27 7.3
Z81068-11|CAB02981.1| 454|Caenorhabditis elegans Hypothetical p... 27 7.3
Z81068-10|CAJ30226.1| 258|Caenorhabditis elegans Hypothetical p... 27 7.3
EF443133-1|ABO31113.1| 656|Caenorhabditis elegans LIM-9 isoform... 27 7.3
Z50740-2|CAA90608.1| 383|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr... 27 9.6
U70849-4|AAK67231.1| 179|Caenorhabditis elegans Hypothetical pr... 27 9.6
U40938-8|AAA81699.1| 123|Caenorhabditis elegans Hypothetical pr... 27 9.6
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond... 27 9.6
>Z50796-2|CAA90669.2| 261|Caenorhabditis elegans Hypothetical
protein T05A6.5 protein.
Length = 261
Score = 31.9 bits (69), Expect = 0.34
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +2
Query: 335 KNMTRAALPRSEAFHDHVAKLALNFSN*RQFDDNKDAIMERRSQFESNLNIEN 493
K +TRA +P + + + N F +N++ +M R S +E+N+NIEN
Sbjct: 176 KYLTRARIPNLTHAISKTSNTVVMYDNPLLFSNNQECLMYRIS-YETNVNIEN 227
>U97008-6|AAB52307.1| 323|Caenorhabditis elegans Serpentine
receptor, class h protein275 protein.
Length = 323
Score = 31.9 bits (69), Expect = 0.34
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Frame = +1
Query: 52 QIPVYFLLQQYCIVFQTPLSYSLTNFGPQD---FSMTSDMGIGL 174
+IPV+FL YCI+F+TP+S +G + +S+ D+G+ L
Sbjct: 24 EIPVHFL-GFYCILFRTPISMKAVKWGMLNLHIWSIGLDLGVSL 66
>AF101309-3|AAN60514.1| 760|Caenorhabditis elegans Hypothetical
protein H24G06.1c protein.
Length = 760
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 475 RLELTTAFHDRVFVVVKLSSIGEI*CQFSHV 383
+L L TA DR ++ KLSS + C+F+ V
Sbjct: 584 QLHLYTAASDRSLIIWKLSSFSDQHCEFTRV 614
>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
protein H24G06.1b protein.
Length = 1601
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 475 RLELTTAFHDRVFVVVKLSSIGEI*CQFSHV 383
+L L TA DR ++ KLSS + C+F+ V
Sbjct: 584 QLHLYTAASDRSLIIWKLSSFSDQHCEFTRV 614
>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
protein H24G06.1a protein.
Length = 1680
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 475 RLELTTAFHDRVFVVVKLSSIGEI*CQFSHV 383
+L L TA DR ++ KLSS + C+F+ V
Sbjct: 584 QLHLYTAASDRSLIIWKLSSFSDQHCEFTRV 614
>Z92780-8|CAI46553.1| 587|Caenorhabditis elegans Hypothetical
protein F25H5.1b protein.
Length = 587
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -2
Query: 247 YKNQNWAQTCTCCV--VTSAVGERPTS 173
YKN+ W + C CC +S G+R TS
Sbjct: 510 YKNEPWHRECFCCTNCNSSLAGQRFTS 536
>Z92780-7|CAI46552.1| 624|Caenorhabditis elegans Hypothetical
protein F25H5.1a protein.
Length = 624
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -2
Query: 247 YKNQNWAQTCTCCV--VTSAVGERPTS 173
YKN+ W + C CC +S G+R TS
Sbjct: 547 YKNEPWHRECFCCTNCNSSLAGQRFTS 573
>Z92780-6|CAI46551.1| 691|Caenorhabditis elegans Hypothetical
protein F25H5.1f protein.
Length = 691
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -2
Query: 247 YKNQNWAQTCTCCV--VTSAVGERPTS 173
YKN+ W + C CC +S G+R TS
Sbjct: 547 YKNEPWHRECFCCTNCNSSLAGQRFTS 573
>Z92780-5|CAI46550.1| 532|Caenorhabditis elegans Hypothetical
protein F25H5.1c protein.
Length = 532
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -2
Query: 247 YKNQNWAQTCTCCV--VTSAVGERPTS 173
YKN+ W + C CC +S G+R TS
Sbjct: 455 YKNEPWHRECFCCTNCNSSLAGQRFTS 481
>Z81068-16|CAJ30230.1| 587|Caenorhabditis elegans Hypothetical
protein F25H5.1b protein.
Length = 587
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -2
Query: 247 YKNQNWAQTCTCCV--VTSAVGERPTS 173
YKN+ W + C CC +S G+R TS
Sbjct: 510 YKNEPWHRECFCCTNCNSSLAGQRFTS 536
>Z81068-15|CAB02980.2| 624|Caenorhabditis elegans Hypothetical
protein F25H5.1a protein.
Length = 624
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -2
Query: 247 YKNQNWAQTCTCCV--VTSAVGERPTS 173
YKN+ W + C CC +S G+R TS
Sbjct: 547 YKNEPWHRECFCCTNCNSSLAGQRFTS 573
>Z81068-14|CAJ30229.1| 691|Caenorhabditis elegans Hypothetical
protein F25H5.1f protein.
Length = 691
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -2
Query: 247 YKNQNWAQTCTCCV--VTSAVGERPTS 173
YKN+ W + C CC +S G+R TS
Sbjct: 547 YKNEPWHRECFCCTNCNSSLAGQRFTS 573
>Z81068-13|CAJ30228.1| 532|Caenorhabditis elegans Hypothetical
protein F25H5.1c protein.
Length = 532
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -2
Query: 247 YKNQNWAQTCTCCV--VTSAVGERPTS 173
YKN+ W + C CC +S G+R TS
Sbjct: 455 YKNEPWHRECFCCTNCNSSLAGQRFTS 481
>Z81068-11|CAB02981.1| 454|Caenorhabditis elegans Hypothetical
protein F25H5.1e protein.
Length = 454
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -2
Query: 247 YKNQNWAQTCTCCV--VTSAVGERPTS 173
YKN+ W + C CC +S G+R TS
Sbjct: 377 YKNEPWHRECFCCTNCNSSLAGQRFTS 403
>Z81068-10|CAJ30226.1| 258|Caenorhabditis elegans Hypothetical
protein F25H5.1d protein.
Length = 258
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -2
Query: 247 YKNQNWAQTCTCCV--VTSAVGERPTS 173
YKN+ W + C CC +S G+R TS
Sbjct: 181 YKNEPWHRECFCCTNCNSSLAGQRFTS 207
>EF443133-1|ABO31113.1| 656|Caenorhabditis elegans LIM-9 isoform
protein.
Length = 656
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -2
Query: 247 YKNQNWAQTCTCCV--VTSAVGERPTS 173
YKN+ W + C CC +S G+R TS
Sbjct: 547 YKNEPWHRECFCCTNCNSSLAGQRFTS 573
>Z50740-2|CAA90608.1| 383|Caenorhabditis elegans Hypothetical
protein F31B12.3 protein.
Length = 383
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 72 SPTILYCISDTTKLFTHQLRTTGLQYDLGHGNRT 173
+PT+L CI++T L + +++ L DL RT
Sbjct: 260 TPTLLRCITNTDGLMSEEMQAQCLPVDLRGDRRT 293
>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical protein
R13G10.1 protein.
Length = 1469
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 359 VTPHESCFSGVQPAPSNYKTFSRQNMDDDVRRDYNIKIQKSKLGTDMY 216
V P+E C S ++P Y+ + ++DDV D KI K + D +
Sbjct: 1089 VLPYE-CISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKF 1135
>U70849-4|AAK67231.1| 179|Caenorhabditis elegans Hypothetical
protein F29B9.5 protein.
Length = 179
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -3
Query: 462 LRRSMIASLLSSN-CRQLEKFNASLAT*SWNASERGNAARVMFFGRAAGSIEL*DVFTSK 286
L+ ++A S+ C ++F L + + G V+FF R +L + FT K
Sbjct: 52 LKGKVVALYFSAGWCPPCKQFTPKLVRFYHHLKKAGKPIEVVFFSRDRSKADLEENFTEK 111
Query: 285 YG 280
+G
Sbjct: 112 HG 113
>U40938-8|AAA81699.1| 123|Caenorhabditis elegans Hypothetical
protein D1009.5 protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 161 WESD*RGALTNCRRYNTTGTCLCPILIFVFLYY 259
W+ D G LT +RY TG+ C +L+F +Y
Sbjct: 94 WDEDCDGYLT--QRY-VTGSIWCEVLVFAIFHY 123
>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
condensation protein protein.
Length = 1469
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 359 VTPHESCFSGVQPAPSNYKTFSRQNMDDDVRRDYNIKIQKSKLGTDMY 216
V P+E C S ++P Y+ + ++DDV D KI K + D +
Sbjct: 1089 VLPYE-CISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKF 1135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,703,525
Number of Sequences: 27780
Number of extensions: 298025
Number of successful extensions: 793
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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