Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0334.Seq
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    24   0.94 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   6.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.8  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 226 QTCTCCVVTSAVGERPTSVRFPCPRS 149
           ++C CC  +   GER  SV   CPR+
Sbjct: 73  RSCMCCQES---GEREASVSLFCPRA 95


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 203 YNTTGTCLCPILIFVFLYYSL 265
           Y++  +   P +I VFLYY++
Sbjct: 346 YSSLSSFYIPCIIMVFLYYNI 366


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 340 HDSCGVTSL*GVP 378
           HD+CGV +L G+P
Sbjct: 326 HDTCGVHNLHGMP 338


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 217 TCCVVTSAVGERPTSVRFPCPRSY*SPVVRS 125
           T CV  S   +RP+    P   S  S +VRS
Sbjct: 259 TECVTNSVTCDRPSDEAEPSSTSKKSGIVRS 289


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 91  QYSIVGEGNKLVFEN 47
           +Y ++G G KL+ +N
Sbjct: 449 KYDLIGNGTKLIIKN 463


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 268 GETII*KYKNQNWAQTCTCCVVTS 197
           G  ++  Y N +WA+   C  +TS
Sbjct: 101 GGPLLEPYPNWSWAKNQNCSGITS 124


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 187 HQLQTLQHNRYMSVP 231
           HQ Q+LQH  Y   P
Sbjct: 356 HQTQSLQHLHYRQPP 370


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +2

Query: 203 YNTTGTCLCPILIFVFLYYSL 265
           Y+  G+   P+L+ +F Y+ +
Sbjct: 250 YSALGSFYIPMLVMLFFYWRI 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,059
Number of Sequences: 438
Number of extensions: 3717
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)