Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0334.Seq
         (578 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30730.1 68415.m03748 serine/threonine protein kinase, putati...    31   0.56 
At3g21580.2 68416.m02722 expressed protein                             29   1.7  
At3g21580.1 68416.m02721 expressed protein                             29   1.7  
At2g30740.1 68415.m03749 serine/threonine protein kinase, putati...    29   2.2  
At1g07620.1 68414.m00817 GTP1/OBG family protein similar to SP|P...    29   2.2  
At5g62230.1 68418.m07814 leucine-rich repeat family protein / pr...    28   3.9  
At5g07180.1 68418.m00818 leucine-rich repeat family protein / pr...    28   3.9  
At2g38890.1 68415.m04780 expressed protein  and genefinder             28   5.2  
At5g43460.1 68418.m05313 lesion inducing protein-related similar...    27   9.0  
At2g41970.1 68415.m05192 protein kinase, putative similar to Pto...    27   9.0  

>At2g30730.1 68415.m03748 serine/threonine protein kinase, putative
           similar to Pto kinase interactor 1 (serine/threonine
           protein kinase) [Lycopersicon esculentum]
           gi|3668069|gb|AAC61805; contains protein kinase domain,
           Pfam:PF00069
          Length = 338

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +3

Query: 87  YCISDTTKLFTHQLRTTGLQYDLGHGNR--TDVGRSPTAD-VTTQQVHVCAQF*FLYFYI 257
           YC+ +  ++  ++  T G  +D+ HG +   D    PT D +T  ++ V A     Y + 
Sbjct: 110 YCVDENLRVLAYEFATMGSLHDILHGRKGVQDALPGPTLDWITRVKIAVEAARGLEYLHE 169

Query: 258 IVSPNII 278
            V P +I
Sbjct: 170 KVQPQVI 176


>At3g21580.2 68416.m02722 expressed protein
          Length = 384

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 81  LLEKEINWYLKTVLEPLDVFFKFV 10
           ++ + +NW   TVLE LD+F  F+
Sbjct: 295 IVSRRVNWQQLTVLETLDIFASFI 318


>At3g21580.1 68416.m02721 expressed protein
          Length = 205

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 81  LLEKEINWYLKTVLEPLDVFFKFV 10
           ++ + +NW   TVLE LD+F  F+
Sbjct: 116 IVSRRVNWQQLTVLETLDIFASFI 139


>At2g30740.1 68415.m03749 serine/threonine protein kinase, putative
           similar to Pto kinase interactor 1 (Pti1)[Lycopersicon
           esculentum] gi|3668069|gb|AAC61805
          Length = 366

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +3

Query: 87  YCISDTTKLFTHQLRTTGLQYDLGHGNRTDVGR--SPTAD-VTTQQVHVCAQF*FLYFYI 257
           YC+ +  ++  ++  T G  +D+ HG +   G    PT D +T  ++ V A     Y + 
Sbjct: 134 YCVDENLRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLDWLTRVKIAVEAARGLEYLHE 193

Query: 258 IVSPNII 278
            V P +I
Sbjct: 194 KVQPPVI 200


>At1g07620.1 68414.m00817 GTP1/OBG family protein similar to
           SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
           subtilis}; contains Pfam profile PF01018: GTP1/OBG
           family
          Length = 1016

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/38 (47%), Positives = 20/38 (52%)
 Frame = +1

Query: 100 TPLSYSLTNFGPQDFSMTSDMGIGLTWGAHQLQTLQHN 213
           T L  +L N    DFSMT     GL  GAHQ + L HN
Sbjct: 859 TTLRPNLGNVNYDDFSMTVADIPGLIKGAHQNRGLGHN 896


>At5g62230.1 68418.m07814 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 966

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 33  AVLKLFSNTSLFPSPTILYCISDTTKLFTHQLRTTG-LQYDLGHGNR 170
           AVL L  N  + P P IL  +S T KL+ H    TG +  +LG+ +R
Sbjct: 289 AVLDLSDNELVGPIPPILGNLSFTGKLYLHGNMLTGPIPSELGNMSR 335


>At5g07180.1 68418.m00818 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 932

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 33  AVLKLFSNTSLFPSPTILYCISDTTKLFTHQLRTTG-LQYDLGHGNR 170
           AVL L  N    P P IL  +S T KL+ H  + TG +  +LG+ +R
Sbjct: 256 AVLDLSDNELTGPIPPILGNLSFTGKLYLHGNKLTGQIPPELGNMSR 302


>At2g38890.1 68415.m04780 expressed protein  and genefinder
          Length = 298

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 66  FPSPTILYCISDTTKLFTHQLRTTGLQYDLGHGNRTDVGRSPTADVT-TQQVH 221
           F S T L   +DTT     +     +++DL H  R  +  SP    T TQ+ H
Sbjct: 88  FTSNTQLRKSADTTTTQGSRFSVASIEFDLFHDLRASLRNSPNVKQTVTQETH 140


>At5g43460.1 68418.m05313 lesion inducing protein-related similar to
           ORF, able to induce HR-like lesions [Nicotiana tabacum]
          Length = 154

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 67  FLLQQYCIVFQTPLSYSLTNFGPQD 141
           +LL  Y +VF  P+ Y   N+GPQ+
Sbjct: 85  YLLASYLVVFG-PILYDFYNYGPQE 108


>At2g41970.1 68415.m05192 protein kinase, putative similar to Pto
           kinase interactor 1 (serine/threonine protein kinase)
           [Lycopersicon esculentum] gi|3668069|gb|AAC61805
          Length = 365

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 87  YCISDTTKLFTHQLRTTGLQYDLGHGNRTDVGRSP 191
           YC+    ++  +Q  T G  +D+ HG +   G  P
Sbjct: 135 YCLEANNRILIYQFATKGSLHDVLHGRKGVQGAEP 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,651,669
Number of Sequences: 28952
Number of extensions: 266665
Number of successful extensions: 586
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)