Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0333.Seq
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    26   4.0  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    25   5.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.0  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   9.2  

>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 88  YLVDFYGLQYPLNTRWXVSSSIH 20
           YL+ F G+QY +   + V  SIH
Sbjct: 472 YLIQFQGIQYRIEYSFFVIESIH 494


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 206 YLSARTHKRSYHL*LRTYNFTDFIYITRCY 295
           Y+S+ T K +  L  RTY     IY+TRC+
Sbjct: 346 YISSETIKEA--LMTRTYRNPFLIYLTRCF 373


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 412  LEQRPXRQT*AIVPIPQCTNFANELRTQKMFTIDFPGEGITSCNIN 275
            L+QRP       + + QC+ + +E + QK   ++ PG+ +   N N
Sbjct: 3235 LDQRPK-----FLHLEQCSLYLSEFQHQKFDEVEIPGQYLLDKNNN 3275


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 281  ITRCYPFTGEVNREHFL 331
            +TRC P T E NR  FL
Sbjct: 1747 LTRCTPTTNEKNRTSFL 1763


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,985,665
Number of Sequences: 5004
Number of extensions: 35535
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)